Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002601.1 Hibiscus syriacus cultivar Beakdansim tig00005260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129480

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
727--1072
168
2.0
171
95
3
626
28
17
16
37
1.91
7521--7581
31
2.0
31
83
6
79
44
6
3
45
1.46
10309--10342
17
2.0
17
94
0
59
20
11
35
32
1.89
13916--13947
16
2.0
16
100
0
64
18
43
18
18
1.88
15543--15676
71
1.9
71
95
1
243
31
5
30
32
1.80
15717--15801
17
5.0
17
94
0
152
17
16
34
31
1.93
16143--16187
12
3.8
12
100
0
90
33
15
8
42
1.78
47976--48185
82
2.5
82
80
5
201
32
15
18
33
1.93
48057--48218
42
3.9
41
71
13
107
33
16
17
31
1.93
49244--49286
23
1.9
23
85
4
61
53
6
2
37
1.41
55043--55087
19
2.2
21
84
7
67
48
0
4
46
1.22
55560--55625
34
1.9
33
81
9
78
34
0
6
59
1.22
55608--55664
14
3.9
15
76
17
57
42
0
1
56
1.10
55595--55664
29
2.5
28
84
11
81
40
0
1
58
1.07
55608--55664
28
1.9
29
86
10
80
42
0
1
56
1.10
55807--55860
17
3.2
17
72
0
54
31
0
3
64
1.11
57396--57458
21
3.0
21
95
0
108
26
39
12
20
1.89
57466--57534
21
3.3
20
82
15
86
18
30
27
23
1.98
58055--58161
34
3.1
34
89
0
160
55
4
3
36
1.39
58557--59163
128
4.7
128
94
0
1070
33
21
23
21
1.97
60082--60128
23
2.0
23
84
12
60
31
2
8
57
1.41
61904--61940
3
12.3
3
94
0
65
64
0
35
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67007--67036
15
2.0
15
100
0
60
46
20
20
13
1.83
68707--68751
2
23.0
2
95
4
83
48
0
0
51
1.00
78066--78157
43
2.1
43
83
0
112
35
14
20
29
1.92
84036--84208
31
5.4
31
68
22
97
37
17
19
25
1.93
84056--84146
26
3.3
26
70
16
83
38
15
17
28
1.90
84032--84146
58
2.0
58
89
0
176
40
15
17
26
1.90
84238--84286
21
2.3
21
96
0
89
51
28
10
10
1.68
93124--93178
17
3.4
16
79
16
60
16
14
7
61
1.54
104552--104592
16
2.5
17
84
4
57
41
17
21
19
1.90
104764--104826
30
2.1
31
88
8
94
50
0
1
47
1.10
104785--104851
20
3.7
20
71
17
56
61
0
0
38
0.96
105287--105354
31
2.2
31
100
0
136
41
2
13
42
1.59
105383--105421
17
2.3
17
86
0
51
41
0
2
56
1.13
111254--111282
2
14.5
2
100
0
58
48
0
0
51
1.00
126385--126439
21
2.7
21
91
2
85
38
21
12
27
1.90
128931--128991
29
2.1
28
82
8
70
68
1
3
26
1.14
128933--128983
23
2.2
23
89
6
77
64
1
3
29
1.22
129052--129087
14
2.5
15
86
9
56
61
0
5
33
1.19

Tables:   1

The End!