genome.fa.s2602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002602.1 Hibiscus syriacus cultivar Beakdansim tig00005261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111681

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5854--5911	28	2.0	28	83	3	71	39	12	1	46	1.51
6370--6406	16	2.2	17	86	13	51	37	5	2	54	1.38
7598--7707	3	37.7	3	88	8	165	66	0	32	0	0.98
7613--7703	20	4.8	20	88	9	145	67	0	32	0	0.91
7598--7707	17	6.3	18	88	9	165	66	0	32	0	0.98
9866--9980	56	2.1	52	88	6	167	55	6	2	35	1.38
12155--12208	20	2.6	21	80	11	67	31	24	20	24	1.98
12210--12272	25	2.9	22	78	19	69	31	6	30	31	1.83
12246--12282	19	1.9	19	100	0	74	37	5	29	27	1.79
12694--12905	21	10.4	21	75	6	193	33	23	20	22	1.97
12686--12885	40	4.9	40	76	7	179	34	22	20	23	1.97
12694--12914	61	3.6	61	90	0	352	33	22	20	23	1.97
12694--12917	40	5.5	39	72	11	155	33	22	20	23	1.97
12923--12960	19	2.0	19	94	0	67	42	10	23	23	1.85
12926--12970	19	2.3	19	84	7	54	40	11	26	22	1.87
15774--15814	21	2.0	21	90	4	66	17	9	31	41	1.82
16894--16971	23	3.3	23	78	1	84	32	21	20	25	1.98
16978--17195	103	2.1	103	93	0	373	36	23	13	26	1.92
22195--22570	43	8.7	43	72	9	230	26	16	6	50	1.70
22854--22901	2	24.0	2	100	0	96	50	0	0	50	1.00
23150--23174	5	5.0	5	100	0	50	40	0	0	60	0.97
25202--25335	61	2.2	59	87	9	182	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26555--26606	20	2.6	20	96	0	95	38	26	13	21	1.90
26662--26855	20	9.6	20	76	8	76	35	25	19	19	1.95
26658--26855	40	5.0	39	81	4	200	35	26	19	19	1.95
26662--26855	60	3.2	60	82	0	244	35	25	19	19	1.95
27232--27302	33	2.2	33	92	0	115	11	22	18	47	1.80
27423--27477	14	3.6	14	73	21	56	41	23	25	9	1.83
27423--27493	33	2.2	33	94	0	124	43	25	22	8	1.81
27489--27586	19	5.7	19	70	22	81	10	24	22	42	1.84
27511--27600	14	5.7	14	74	23	81	8	25	23	42	1.83
27494--27608	33	3.5	33	95	0	212	9	24	20	45	1.81
29250--29907	185	3.5	186	99	0	1293	22	12	18	46	1.83
29250--29907	93	7.1	93	99	0	1293	22	12	18	46	1.83
29250--29907	278	2.4	278	99	0	1307	22	12	18	46	1.83
29951--30079	19	7.3	19	75	17	125	45	28	17	8	1.77
29987--30079	33	2.8	32	91	4	150	46	27	18	7	1.76
29951--30079	52	2.5	52	74	14	140	45	28	17	8	1.77
30075--30209	19	7.6	19	75	16	128	11	19	23	45	1.82
30097--30153	14	3.7	14	77	20	60	10	21	22	45	1.82
30080--30172	33	2.8	33	95	0	168	10	20	21	47	1.80
32113--32148	14	2.6	14	95	0	63	33	0	22	44	1.53
32255--32356	19	5.6	19	84	13	151	44	17	23	14	1.86
32363--32604	33	6.9	35	81	15	197	14	21	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32385--32671	19	16.4	19	78	17	329	13	20	18	46	1.83
32363--32671	52	5.9	49	86	9	289	14	21	18	46	1.84
32347--32604	122	2.1	124	94	2	459	15	20	17	45	1.85
32404--32671	33	7.8	33	77	14	249	13	20	18	46	1.83
34954--34978	12	2.1	12	100	0	50	0	28	0	72	0.86
35153--35199	24	2.0	24	87	8	69	38	21	14	25	1.92
35882--36250	20	18.5	20	86	4	458	20	18	26	34	1.96
37054--37083	13	2.2	14	94	5	53	40	13	26	20	1.89
41859--41926	20	3.3	20	76	17	68	70	0	2	26	1.01
41859--42002	21	6.5	22	67	23	72	65	1	4	29	1.20
41860--41927	22	3.2	20	75	15	66	72	0	2	25	0.99
41872--41944	24	3.1	24	77	15	64	67	0	4	28	1.09
41859--41949	44	2.1	42	82	8	103	67	0	4	28	1.10
42638--42739	37	2.8	37	87	0	132	31	12	14	41	1.84
43492--44762	106	12.0	106	92	0	2013	22	18	25	34	1.96
45730--45784	21	2.5	22	94	5	103	27	12	23	36	1.91
46385--46445	17	3.7	16	76	10	52	1	11	6	80	0.97
46412--46438	12	2.2	12	100	0	54	0	14	7	77	0.97
46408--46452	20	2.3	19	84	3	63	0	11	6	82	0.84
46398--46465	29	2.3	29	78	11	77	0	14	7	77	0.96
50739--50793	20	2.8	20	76	17	62	69	1	7	21	1.23
50884--51000	26	4.9	21	71	25	74	64	0	3	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50896--50999	26	4.1	26	71	22	78	66	0	2	29	1.13
50892--50953	8	8.0	8	71	20	51	66	0	1	32	1.02
50883--51023	24	6.4	22	73	23	93	65	1	3	29	1.18
50907--51034	43	2.9	43	75	13	127	65	1	2	30	1.14
51140--51191	16	3.3	15	74	12	50	65	0	3	30	1.10
51201--51248	23	2.0	24	84	11	64	70	0	2	27	0.98
51674--51758	37	2.3	37	85	0	107	29	11	15	43	1.82
57778--57819	19	2.2	20	82	4	50	59	11	19	9	1.59
58223--58259	2	18.5	2	100	0	74	51	0	48	0	1.00
58261--58291	4	7.8	4	100	0	62	25	0	74	0	0.82
58643--58708	3	23.0	3	79	14	77	28	1	1	68	1.08
58643--58708	29	2.4	29	85	7	84	28	1	1	68	1.08
72074--72108	16	2.2	16	90	10	54	77	0	14	8	0.99
72065--72107	16	2.9	14	80	16	50	76	0	16	6	0.99
73192--73403	89	2.4	90	87	3	295	26	29	19	24	1.98
73602--73666	3	22.0	3	81	12	73	29	1	1	67	1.09
73602--73665	11	5.5	11	81	18	76	28	1	1	68	1.07
73607--73666	14	4.5	13	80	19	70	30	1	1	66	1.11
84460--84511	25	2.1	25	100	0	104	50	7	17	25	1.72
86736--86795	19	3.0	19	72	25	52	50	5	0	45	1.23
97363--97388	2	13.0	2	100	0	52	50	0	0	50	1.00
98626--98667	20	2.1	20	100	0	84	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98925--99018	49	1.9	49	88	0	143	13	30	37	18	1.90
99769--99822	27	2.0	28	85	10	76	42	0	1	55	1.10
99761--99832	32	2.3	30	76	9	74	47	0	1	51	1.09
99996--100050	10	5.1	11	77	6	51	43	0	1	54	1.10
100003--100058	20	2.8	20	74	12	62	42	0	1	55	1.10
110577--110632	27	2.1	27	93	0	94	19	30	12	37	1.89

Tables:   1

The End!