genome.fa.s2603.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002603.1 Hibiscus syriacus cultivar Beakdansim tig00005263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93015

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1264--1328	25	2.6	25	80	0	85	35	9	13	41	1.77
1608--1653	22	2.1	22	84	8	58	41	10	8	39	1.71
1669--1731	23	2.7	23	90	4	92	34	4	20	39	1.74
1669--1741	23	3.2	23	82	7	85	32	4	21	41	1.72
2155--2190	18	2.0	18	94	0	63	36	5	8	50	1.56
2461--2526	34	1.9	34	96	0	123	48	18	16	16	1.82
2880--2926	21	2.2	22	77	11	53	38	12	10	38	1.78
2943--3014	23	3.2	23	80	4	83	33	4	20	41	1.72
3157--3222	30	2.2	28	81	7	69	51	4	0	43	1.22
17007--17119	35	3.2	35	81	5	138	41	20	0	37	1.58
18181--18302	35	3.4	35	84	5	156	36	1	20	41	1.62
23936--23964	2	14.5	2	100	0	58	51	0	0	48	1.00
24054--24105	2	26.5	2	96	3	97	51	0	0	48	1.00
24417--24461	16	2.8	16	75	0	54	35	4	28	31	1.77
24588--24833	125	2.0	125	86	4	343	45	14	14	26	1.83
30099--30189	44	2.1	44	89	4	139	42	14	7	35	1.74
33339--33368	13	2.3	13	100	0	60	53	10	13	23	1.69
34146--34177	2	16.0	2	100	0	64	50	0	0	50	1.00
41772--41804	4	8.0	4	93	6	57	27	0	0	72	0.85
53682--53708	2	13.5	2	100	0	54	48	0	0	51	1.00
57507--57580	21	3.6	21	74	3	78	20	17	27	35	1.95
57506--57600	41	2.3	41	94	0	163	17	18	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57528--57620	20	4.6	20	81	2	105	16	21	21	40	1.91
57528--57647	61	2.0	61	86	6	172	17	21	20	40	1.92
57614--57704	22	4.3	22	76	9	91	20	17	24	37	1.94
57592--57668	40	1.9	40	89	7	120	20	22	19	37	1.94
57804--57834	6	5.3	6	96	3	55	29	54	16	0	1.42
58344--58368	6	4.2	6	100	0	50	0	32	36	32	1.58
58365--58400	6	6.0	6	100	0	72	0	16	50	33	1.46
58333--58398	12	5.6	11	83	15	55	0	22	46	30	1.52
58333--58400	18	3.8	18	78	19	63	0	22	47	30	1.52
58367--58406	18	2.2	18	90	0	62	5	12	47	35	1.63
62634--62673	2	20.0	2	100	0	80	50	0	0	50	1.00
67334--67370	4	9.2	4	87	0	56	45	24	2	27	1.66
69302--69338	2	18.5	2	100	0	74	51	0	0	48	1.00
70588--70629	14	3.1	13	83	10	57	33	0	0	66	0.92
70590--70634	21	2.1	21	87	0	63	33	0	0	66	0.92
70590--70627	7	5.4	7	81	12	51	28	0	0	71	0.87
70590--70650	29	2.1	28	85	8	79	34	0	0	65	0.93
71834--71859	2	13.0	2	100	0	52	50	0	0	50	1.00
72292--72467	84	2.1	85	92	1	291	26	18	15	40	1.90
80463--80505	22	2.0	21	90	4	68	37	13	0	48	1.43
80503--80563	25	2.3	27	94	5	108	34	9	14	40	1.79
82747--82815	30	2.2	31	89	5	104	14	36	4	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91238--91286	17	2.8	18	78	3	55	34	8	28	28	1.86

Tables:   1

The End!