Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002605.1 Hibiscus syriacus cultivar Beakdansim tig00005267_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53222

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57--250
46
4.3
46
85
4
261
34
21
5
38
1.77
57--250
91
2.1
91
84
5
259
34
21
5
38
1.77
357--477
59
2.1
59
87
0
170
28
24
17
28
1.97
12714--12837
42
3.0
39
81
8
122
22
20
19
37
1.94
12714--12827
21
5.6
21
70
10
58
21
20
19
38
1.93
12758--12827
19
3.5
19
72
12
68
21
20
18
40
1.92
12739--12837
42
2.4
42
88
3
148
22
19
20
38
1.94
12840--12900
21
2.9
21
90
0
104
24
22
19
32
1.97
14033--14077
21
2.1
21
95
0
81
35
28
17
17
1.93
14961--15053
17
5.4
16
72
16
53
38
0
3
58
1.15
14993--15053
17
3.4
18
77
11
54
44
0
1
54
1.10
14952--15060
34
3.3
33
77
10
89
36
0
2
60
1.11
15198--15251
17
3.2
17
72
0
54
31
0
3
64
1.11
16774--16821
21
2.3
21
85
0
60
25
39
12
22
1.89
16825--16897
21
3.5
21
88
7
112
17
34
28
19
1.95
17419--17515
33
2.9
34
85
3
133
55
4
3
37
1.35
17417--17522
34
3.2
33
82
8
133
54
4
2
37
1.36
19978--20002
2
12.5
2
100
0
50
52
0
48
0
1.00
28361--28415
25
2.2
25
96
0
101
20
20
3
56
1.57
32374--32421
18
2.6
19
83
9
55
14
18
12
54
1.71
39321--39436
58
2.0
58
94
0
205
25
29
18
27
1.98
39715--39766
23
2.2
24
90
10
81
28
3
1
65
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39913--39968
22
2.5
23
80
5
71
19
5
3
71
1.21
39922--39970
23
2.1
23
88
7
73
20
4
2
73
1.10
41447--41511
28
2.4
27
80
12
80
67
3
0
29
1.05
41447--41500
28
1.9
28
88
7
83
68
3
0
27
1.06
42325--42381
21
2.7
21
91
0
96
28
12
22
36
1.90

Tables:   1

The End!