genome.fa.s2606.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002606.1 Hibiscus syriacus cultivar Beakdansim tig00005269_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89744

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148--1210	28	2.2	28	91	0	99	15	12	36	34	1.86
2035--2121	42	2.1	42	95	0	156	43	12	13	29	1.81
7272--7327	22	2.7	20	81	15	69	39	17	23	19	1.92
8457--8506	20	2.5	20	86	0	82	38	18	20	24	1.93
8689--8728	20	1.9	22	90	10	66	40	40	10	10	1.72
9364--9464	31	3.3	30	82	9	132	42	5	7	43	1.58
9518--9593	38	1.9	41	82	12	97	53	14	9	22	1.68
17256--18347	572	1.9	572	96	0	2033	26	13	24	36	1.92
22799--22898	50	2.0	50	98	0	191	20	35	18	27	1.95
25043--25105	24	2.6	24	82	0	90	25	7	9	57	1.58
26066--26175	3	37.0	3	98	1	213	66	0	0	33	0.92
26374--26404	15	2.0	16	93	6	55	25	35	0	38	1.56
26479--26528	17	3.1	17	68	26	54	52	22	6	20	1.68
32642--32700	24	2.5	22	76	15	55	35	23	27	13	1.92
39730--39755	2	13.0	2	100	0	52	50	0	0	50	1.00
40592--40618	11	2.5	11	100	0	54	40	7	37	14	1.74
40708--40899	89	2.2	89	91	6	320	36	16	9	36	1.81
42901--43012	30	4.0	28	78	11	113	40	21	3	34	1.71
42864--43012	29	5.2	28	78	11	133	41	20	4	33	1.71
43033--43083	23	2.2	23	96	0	93	9	21	50	17	1.74
43027--43066	18	2.2	18	100	0	80	10	22	50	17	1.76
43028--43096	23	3.2	23	80	13	60	17	21	43	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45717--45772	2	28.0	2	100	0	112	50	0	0	50	1.00
46605--46675	3	23.7	3	80	5	81	60	4	1	33	1.25
46618--46683	12	5.5	12	74	16	50	60	4	1	33	1.26
46887--47181	90	3.3	91	93	0	486	35	20	18	24	1.95
47269--47606	43	7.3	43	75	15	307	30	28	12	28	1.93
47216--47457	98	2.5	98	89	2	344	30	27	13	29	1.94
47269--47606	141	2.4	141	91	1	543	30	28	12	28	1.93
47637--47795	36	4.3	36	85	2	192	35	14	22	27	1.93
47731--47852	57	2.1	57	92	3	201	37	12	24	25	1.90
47687--47898	93	2.3	92	91	2	343	37	13	23	25	1.91
47788--47888	36	2.8	36	95	0	175	36	13	25	23	1.92
47767--47898	21	6.9	21	69	19	117	37	12	25	24	1.91
48221--48332	34	3.3	33	88	2	161	34	12	18	33	1.89
48448--48589	32	4.4	32	90	1	212	33	25	13	28	1.93
48448--48597	65	2.3	64	89	2	219	32	24	14	30	1.94
48582--48613	16	2.0	16	100	0	64	25	18	12	43	1.85
48598--48688	32	2.8	32	96	1	164	31	23	14	30	1.94
48518--48677	81	2.0	79	93	2	275	30	23	14	31	1.94
48485--48688	113	1.8	113	95	0	372	31	23	14	30	1.94
55272--55313	2	21.0	2	90	9	68	50	0	2	47	1.14
56160--56227	3	22.7	3	79	5	75	60	4	1	33	1.26
62130--62309	29	6.2	30	85	5	228	40	19	6	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62130--62309	59	3.1	58	85	4	247	40	19	6	34	1.76
62324--62380	22	2.5	23	85	5	80	15	21	43	19	1.87
76057--76093	18	2.1	18	100	0	74	45	5	5	43	1.49
76441--76479	16	2.4	16	95	4	69	69	0	0	30	0.89
76436--76487	16	2.8	20	75	25	67	71	0	0	28	0.87
76439--76499	20	3.0	20	72	11	52	73	0	0	26	0.83

Tables:   1

The End!