genome.fa.s2608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002608.1 Hibiscus syriacus cultivar Beakdansim tig00005273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129546

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10407--10440	2	17.0	2	100	0	68	50	0	0	50	1.00
11150--11195	23	2.0	23	83	4	58	21	10	2	65	1.35
11169--11213	15	3.1	14	78	9	54	24	6	0	68	1.13
25349--25380	17	1.9	16	93	6	55	65	0	31	3	1.08
26505--26535	16	1.9	16	100	0	62	51	19	9	19	1.74
27828--27879	25	1.9	29	85	14	76	32	1	1	63	1.16
28854--28901	16	2.7	18	75	15	55	39	0	0	60	0.97
28854--28904	18	2.9	17	77	11	59	39	0	0	60	0.97
28855--28910	18	3.2	17	73	14	51	41	1	0	57	1.09
29097--29161	14	4.7	13	80	14	76	50	1	1	46	1.20
29100--29161	29	2.2	27	91	5	97	50	1	1	46	1.20
29109--29193	29	2.9	28	84	7	89	50	1	1	47	1.16
36772--36972	27	7.4	27	89	0	231	28	26	29	15	1.96
37605--37655	26	2.0	26	84	0	66	37	3	7	50	1.50
37685--37726	21	2.0	21	82	17	52	33	0	21	45	1.52
40308--40389	29	2.8	29	94	1	137	32	14	9	42	1.79
45075--45156	29	2.8	29	94	1	137	32	14	9	42	1.79
45919--45975	19	2.7	22	78	15	75	31	5	28	35	1.79
45924--45990	19	3.2	19	76	17	62	34	5	28	31	1.81
46416--46460	21	2.1	21	87	0	63	22	13	20	44	1.85
46445--46623	52	3.3	52	85	9	223	22	16	25	35	1.95
46529--46803	20	13.6	20	77	11	247	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46549--46743	41	4.8	41	83	6	227	24	17	26	31	1.97
46515--46803	61	4.7	62	81	6	272	24	17	26	31	1.97
46515--46724	102	2.1	102	92	0	348	23	16	26	33	1.96
46717--46844	60	2.1	60	98	0	247	25	17	29	27	1.98
46758--46863	20	5.3	20	72	13	85	23	17	30	28	1.97
46829--46865	19	1.9	19	94	0	65	21	16	29	32	1.95
56146--56228	30	2.8	30	85	1	105	33	30	19	16	1.94
56206--56298	31	3.0	31	76	3	98	35	19	18	26	1.95
56951--56983	2	16.5	2	100	0	66	48	0	0	51	1.00
57494--57634	64	2.2	63	81	5	158	26	17	17	37	1.93
58533--58569	2	18.5	2	100	0	74	48	0	0	51	1.00
58615--58656	20	2.2	19	86	4	57	14	26	0	59	1.35
60717--60811	31	3.1	31	80	3	111	34	21	17	26	1.95
61942--62105	63	2.6	62	82	4	193	26	20	18	33	1.96
63002--63061	21	2.9	21	79	0	66	28	21	25	25	1.99
63609--63686	31	2.6	30	87	4	120	41	7	5	46	1.55
72024--72086	23	2.7	23	80	5	63	46	1	1	50	1.20
72083--72137	28	2.0	28	85	7	76	47	1	0	50	1.11
72095--72249	29	5.0	30	70	17	95	49	1	0	49	1.14
72063--72145	24	3.4	24	72	16	73	49	1	0	49	1.08
72190--72233	22	2.0	23	86	4	63	54	0	0	45	0.99
74090--74166	28	2.6	29	79	10	75	28	11	5	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81454--81498	19	2.4	20	75	14	51	55	0	0	44	0.99
86728--86822	42	2.3	42	81	5	113	52	3	1	43	1.24
88450--88501	23	2.3	23	86	0	68	40	5	19	34	1.75
88593--89293	199	3.5	196	84	5	844	30	14	14	39	1.87
93525--93585	13	4.3	13	77	18	68	18	45	21	14	1.84
93561--93607	8	6.5	8	77	22	50	17	36	25	21	1.94
93524--93566	18	2.4	18	88	0	68	18	48	20	11	1.79
93577--93608	7	4.4	7	92	7	55	15	31	28	25	1.96
93577--93605	15	1.9	15	100	0	58	17	27	27	27	1.97
96057--96171	24	4.8	24	85	6	144	24	17	18	40	1.91
98370--98427	13	4.3	13	88	4	80	15	43	22	18	1.88
98388--98434	8	6.5	8	77	22	59	14	38	25	21	1.92
98351--98393	18	2.4	18	96	0	77	16	51	20	11	1.75
98404--98434	7	4.3	7	92	8	53	12	35	25	25	1.92
98388--98434	15	3.3	15	91	5	71	14	38	25	21	1.92
103564--104755	201	5.8	200	78	7	1171	32	16	13	37	1.87
104365--104419	21	2.6	21	91	0	92	47	21	12	18	1.82
104756--104794	15	2.6	15	87	0	51	35	7	17	38	1.79
107806--109542	200	8.7	200	83	3	2028	31	16	14	37	1.88
107782--109542	402	4.4	401	82	4	2065	31	16	14	37	1.88
107821--109542	602	2.9	601	89	2	2620	31	16	14	37	1.89
111451--111561	18	6.2	18	96	0	177	2	39	0	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111731--111830	33	3.0	33	91	0	164	23	45	0	32	1.53
111863--111907	21	2.1	21	91	0	72	15	33	8	42	1.78
112285--112340	24	2.4	23	80	8	69	51	3	0	44	1.18
115775--115821	20	2.3	20	96	0	85	44	27	17	10	1.81

Tables:   1

The End!