genome.fa.s261.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000261.1 Hibiscus syriacus cultivar Beakdansim tig00000483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  228775

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2343--2382	19	2.0	20	85	4	55	62	0	15	22	1.32
5179--5485	74	4.1	74	96	0	560	32	15	12	38	1.85
5908--5988	2	40.5	2	100	0	162	50	0	0	49	1.00
20154--20215	20	3.3	20	70	25	71	27	30	19	22	1.98
20255--20323	36	1.9	36	87	0	102	28	26	14	30	1.95
20696--20759	34	1.9	32	84	6	83	34	14	25	26	1.94
23071--23222	20	8.0	20	70	17	83	29	28	13	28	1.94
23071--23122	16	2.9	17	78	21	54	26	28	19	25	1.98
23072--23141	36	1.9	36	88	0	104	27	28	15	28	1.96
23080--23200	56	2.2	56	93	0	206	28	28	13	29	1.94
24473--24526	20	2.7	20	97	2	99	33	44	11	11	1.75
24713--24779	34	2.0	34	87	0	98	32	16	26	23	1.96
59659--59708	25	2.0	25	96	0	91	22	26	12	40	1.88
62676--62725	25	2.0	25	96	0	91	22	26	12	40	1.88
65696--65745	25	2.0	25	96	0	91	22	26	12	40	1.88
68717--68766	25	2.0	25	96	0	91	22	26	12	40	1.88
72200--72247	20	2.3	21	82	10	55	72	0	4	22	1.01
73478--73576	39	2.6	37	80	13	114	44	7	3	45	1.46
74149--75435	84	15.6	84	76	7	1005	25	19	24	30	1.98
74147--75435	249	5.2	249	84	3	1439	25	19	24	30	1.98
74149--75458	164	7.9	164	78	6	1003	25	19	24	30	1.98
80052--80142	4	23.2	4	73	14	50	70	2	2	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80060--80142	9	9.3	9	68	25	52	69	2	2	25	1.12
86861--86916	19	2.8	20	91	5	96	21	30	25	23	1.99
95023--95180	43	3.7	43	90	0	235	28	24	15	31	1.96
97307--97371	21	3.2	20	75	16	62	36	4	7	50	1.52
97300--97373	24	3.2	24	70	24	61	37	4	6	51	1.47
97400--97444	23	2.0	22	86	4	63	37	2	2	57	1.23
97894--97960	35	1.9	35	100	0	134	20	22	5	50	1.69
105602--105682	22	3.6	22	70	8	74	20	13	4	60	1.52
106832--107042	95	2.2	95	87	0	305	33	11	26	27	1.92
107446--107841	46	8.6	46	87	2	535	45	9	20	24	1.80
108413--108437	13	1.9	13	100	0	50	44	8	16	32	1.76
115113--115223	42	2.6	42	82	2	125	33	23	11	31	1.91
116097--116136	19	2.0	20	90	4	64	42	15	7	35	1.75
118335--118400	33	2.0	33	88	5	98	31	27	10	30	1.90
118838--118882	19	2.3	20	88	3	65	37	22	4	35	1.74
119155--119206	21	2.5	21	96	0	95	34	11	15	38	1.83
119307--119344	20	2.1	18	85	14	51	34	15	23	26	1.95
119214--119437	95	2.4	95	90	3	335	33	15	25	25	1.95
119829--120067	26	10.1	25	68	22	160	45	9	21	23	1.81
119887--120110	46	4.8	46	87	4	326	44	9	21	23	1.82
119828--120101	72	3.9	72	70	18	232	44	10	20	24	1.82
119959--120079	20	5.4	20	71	22	89	43	10	23	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126718--126751	16	2.1	16	100	0	68	11	5	5	76	1.14
133236--133286	21	2.4	21	90	0	75	39	33	7	19	1.81
137261--137357	51	1.9	51	97	0	185	26	28	15	28	1.96
147105--147171	20	3.2	22	63	16	61	26	7	8	56	1.56
147103--147183	40	2.0	40	100	0	162	27	7	11	54	1.62
147575--147736	81	2.0	81	100	0	324	30	13	17	38	1.88
149995--150050	29	1.9	29	100	0	112	48	12	14	25	1.78
154687--154745	29	2.0	29	96	0	109	50	13	11	23	1.74
156142--156210	23	3.0	23	82	0	93	18	26	24	30	1.98
159629--159686	20	2.6	23	78	10	68	32	20	20	25	1.97
161118--161183	23	2.9	23	81	0	78	19	25	22	31	1.98
181440--181499	19	3.2	18	72	18	52	36	21	21	20	1.95
181909--181950	12	3.4	12	86	3	57	33	9	0	57	1.31
182726--182840	51	2.2	52	89	1	169	21	6	9	61	1.50
188564--188657	3	30.0	3	77	18	50	54	2	3	40	1.28
188566--188661	6	13.6	7	70	25	60	55	2	3	39	1.28
188554--188656	12	8.4	12	73	23	74	52	1	2	42	1.27
188798--188851	20	2.7	20	85	0	63	27	24	24	24	2.00
188788--189148	119	3.0	118	89	2	562	34	18	15	31	1.92
189201--189282	42	2.0	42	92	0	137	41	20	15	21	1.90
201960--202070	3	38.0	3	77	15	99	58	0	1	38	1.15
201949--202074	15	9.3	14	77	17	99	57	0	1	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203032--203094	23	2.7	23	82	4	74	38	23	14	23	1.92
203083--203148	23	2.9	23	81	4	80	30	27	24	18	1.98
204840--205101	137	1.9	138	82	5	325	22	14	28	33	1.94
205154--205222	36	1.9	36	96	0	129	62	10	1	26	1.35
205511--205545	6	5.8	6	93	0	61	62	0	0	37	0.95
209565--209598	14	2.5	13	90	4	50	20	0	32	47	1.51
209566--209598	13	2.4	14	90	5	50	21	0	33	45	1.52
217040--217115	3	26.0	3	74	15	61	43	0	0	56	0.99
217052--217119	35	1.9	36	91	8	113	42	0	0	57	0.98
217479--217513	13	2.6	13	90	4	52	80	2	17	0	0.84
217477--217523	14	3.3	14	91	5	76	80	2	17	0	0.80
218653--218694	20	2.2	19	86	4	57	33	0	2	64	1.07
221293--221332	21	1.9	21	94	0	71	22	12	10	55	1.67
225499--225832	114	2.9	114	93	0	551	33	14	19	31	1.92
228102--228156	22	2.5	22	93	0	101	34	10	14	40	1.81

Tables:   1

The End!