genome.fa.s2612.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002612.1 Hibiscus syriacus cultivar Beakdansim tig00005282_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87866

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5176--5241	23	2.8	24	79	11	64	45	0	3	51	1.16
5325--5410	27	3.0	27	76	17	86	46	1	1	51	1.16
5230--5414	95	1.9	94	79	14	202	47	1	1	50	1.18
5204--5417	49	4.3	49	69	23	119	47	1	1	50	1.18
5668--5750	42	2.0	42	85	4	114	53	15	8	22	1.69
19097--19144	21	2.2	23	85	7	64	33	12	0	54	1.38
21350--21385	14	2.6	14	86	0	54	58	0	16	25	1.38
26575--26636	20	3.1	20	88	0	88	37	19	8	35	1.81
32742--33126	42	9.0	42	75	12	254	25	17	7	49	1.72
32742--33077	85	4.0	81	79	9	309	26	18	6	48	1.72
38837--38869	16	1.9	17	88	11	50	63	0	6	30	1.18
39558--39623	21	3.2	21	60	4	53	25	19	24	30	1.98
39565--39631	21	3.2	21	61	4	55	31	17	23	26	1.97
39668--39733	20	3.2	20	68	19	64	13	21	25	39	1.90
39557--39736	41	4.4	41	90	3	265	22	19	23	34	1.96
39824--39880	6	10.2	6	98	1	86	36	45	17	0	1.49
40247--40325	21	3.8	20	75	9	79	36	25	18	18	1.94
40640--40685	23	2.0	24	86	4	67	63	4	6	26	1.38
41612--41672	29	2.1	29	82	11	72	27	31	19	21	1.97
42206--42303	30	3.3	30	85	2	135	24	25	14	35	1.93
47157--47246	29	3.1	29	77	0	81	25	27	21	25	1.99
47255--47293	13	2.9	13	84	3	51	20	23	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47748--47791	23	1.9	23	86	9	63	31	9	25	34	1.87
49178--49254	37	2.1	37	85	4	102	48	1	3	46	1.28
49400--49437	20	1.9	20	88	0	58	21	26	10	42	1.85
49916--49958	20	2.2	20	91	0	68	32	20	13	32	1.92
50299--50476	30	5.9	30	87	1	214	20	23	19	37	1.94
51031--51073	13	3.0	15	83	10	54	34	0	4	60	1.17
51042--51080	13	2.9	13	96	3	69	38	0	0	61	0.96
55086--55176	31	3.0	31	96	3	168	32	6	17	42	1.75
58491--58581	31	3.0	31	96	3	168	32	6	17	42	1.75
61885--61975	31	3.0	31	96	3	168	32	6	17	42	1.75
65276--65366	31	3.0	31	96	3	168	32	6	17	42	1.75
65431--65516	19	4.5	19	94	0	118	39	9	12	38	1.76
65622--65664	21	2.0	21	95	0	77	23	20	27	27	1.99
65692--65731	20	1.9	21	85	10	55	37	37	10	15	1.80
68052--68210	2	79.5	2	74	11	121	53	2	3	40	1.32
68677--68759	23	3.7	22	73	20	57	55	1	1	42	1.15
69036--69070	16	2.2	16	89	0	52	34	17	17	31	1.93
81658--81736	32	2.5	32	85	2	115	18	21	6	53	1.67
83264--83635	188	2.0	190	86	4	529	44	10	5	38	1.64
84638--84817	87	2.1	86	96	1	333	42	16	8	33	1.78

Tables:   1

The End!