Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002613.1 Hibiscus syriacus cultivar Beakdansim tig00005286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 176586
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Found at i:12436 original size:34 final size:35
Alignment explanation
Indices: 12381--12458 Score: 97
Period size: 34 Copynumber: 2.2 Consensus size: 35
12371 CTCCTTCCTC
* *
12381 TCTCATTCTTCACGACTCATTCTTCACTCTT-TCT
1 TCTCCTTCTTCACAACTCATTCTTCACTCTTCTCT
*
12415 TCTCCTTCTTCACAA-TCCATTCTTTACTCTTCCTCT
1 TCTCCTTCTTCACAACT-CATTCTTCACTCTT-CTCT
12451 TCTCCTTC
1 TCTCCTTC
12459 ACTGCATTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 1 0.03
34 26 0.68
36 11 0.29
ACGTcount: A:0.13, C:0.38, G:0.01, T:0.47
Consensus pattern (35 bp):
TCTCCTTCTTCACAACTCATTCTTCACTCTTCTCT
Found at i:12993 original size:17 final size:16
Alignment explanation
Indices: 12971--13015 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
12961 AACCGGGTAT
12971 CGGGTACCCGTAAAATC
1 CGGGTACCCGTAAAA-C
**
12988 CGGGTACCCG-ATTAC
1 CGGGTACCCGTAAAAC
13003 CGGGTACCCGTAA
1 CGGGTACCCGTAA
13016 CATTCGGGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 11 0.46
16 3 0.12
17 10 0.42
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (16 bp):
CGGGTACCCGTAAAAC
Found at i:15392 original size:23 final size:24
Alignment explanation
Indices: 15366--15411 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
15356 TCGATCAAAT
*
15366 GAATTTAAGGGA-TTGAGTATTTG
1 GAATTTAAGGGATTTGAGAATTTG
*
15389 GAATTTTAGGGATTTGAGAATTT
1 GAATTTAAGGGATTTGAGAATTT
15412 TAGGTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.41
Consensus pattern (24 bp):
GAATTTAAGGGATTTGAGAATTTG
Found at i:15423 original size:16 final size:17
Alignment explanation
Indices: 15384--15415 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15374 GGGATTGAGT
15384 ATTTG-GAATTTTAGGG
1 ATTTGAGAATTTTAGGG
15400 ATTTGAGAATTTTAGG
1 ATTTGAGAATTTTAGG
15416 TTTTGAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (17 bp):
ATTTGAGAATTTTAGGG
Found at i:31410 original size:17 final size:17
Alignment explanation
Indices: 31388--31420 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
31378 ACACTAGCAT
31388 CATCGAGAACTATATAA
1 CATCGAGAACTATATAA
31405 CATCGAGAACTATATA
1 CATCGAGAACTATATA
31421 GCTACAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
CATCGAGAACTATATAA
Found at i:35801 original size:20 final size:20
Alignment explanation
Indices: 35765--35802 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35755 ATCCTATTCC
**
35765 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
35785 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
35803 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:37755 original size:16 final size:16
Alignment explanation
Indices: 37734--37767 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
37724 ATTTTATCGT
37734 GTTGCGTTAATATTGC
1 GTTGCGTTAATATTGC
37750 GTTGCGTTAATATTGC
1 GTTGCGTTAATATTGC
37766 GT
1 GT
37768 CACGGTGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.26, T:0.44
Consensus pattern (16 bp):
GTTGCGTTAATATTGC
Found at i:47185 original size:22 final size:22
Alignment explanation
Indices: 47148--47255 Score: 182
Period size: 22 Copynumber: 5.0 Consensus size: 22
47138 TGTTAGACTT
47148 GCTAAACCC-GGTTTGACACGA
1 GCTAAACCCGGGTTTGACACGA
*
47169 CCTAAACCCGGGTTTGACACGA
1 GCTAAACCCGGGTTTGACACGA
*
47191 GTTAAACCCGGGTTTGACACGA
1 GCTAAACCCGGGTTTGACACGA
47213 GCTAAACCCGGGTTTGACACGA
1 GCTAAACCCGGGTTTGACACGA
*
47235 GCTAAACCCGGGTCTGACACG
1 GCTAAACCCGGGTTTGACACG
47256 GTTGTCTTAG
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
21 8 0.10
22 73 0.90
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.19
Consensus pattern (22 bp):
GCTAAACCCGGGTTTGACACGA
Found at i:50983 original size:16 final size:17
Alignment explanation
Indices: 50962--51013 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
50952 TTTTTAATTT
50962 AATTACT-TAACTTTCA
1 AATTACTCTAACTTTCA
50978 AATTACTCCTAA--TTC-
1 AATTACT-CTAACTTTCA
*
50993 AATCACTCTAACTTTCA
1 AATTACTCTAACTTTCA
51010 AATT
1 AATT
51014 TAATTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 4 0.14
15 6 0.21
16 13 0.45
17 3 0.10
18 3 0.10
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (17 bp):
AATTACTCTAACTTTCA
Found at i:55421 original size:21 final size:21
Alignment explanation
Indices: 55395--55507 Score: 106
Period size: 21 Copynumber: 5.4 Consensus size: 21
55385 TCGTACCAAG
55395 GACGAGAAGAGCATTCATAAA
1 GACGAGAAGAGCATTCATAAA
* *
55416 GACGAGAATG-TCATTCATCAA
1 GACGAGAA-GAGCATTCATAAA
* *
55437 GACGAG-AGTGTCATTCATCAA
1 GACGAGAAGAG-CATTCATAAA
* * *
55458 GATGAGAAGACCCTTCATAAA
1 GACGAGAAGAGCATTCATAAA
* *
55479 GACGAGAAGA-CCTTCGTAAA
1 GACGAGAAGAGCATTCATAAA
55499 GACGAGAAG
1 GACGAGAAG
55508 TCCACATCGC
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
19 1 0.01
20 19 0.24
21 55 0.71
22 3 0.04
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (21 bp):
GACGAGAAGAGCATTCATAAA
Found at i:59616 original size:124 final size:125
Alignment explanation
Indices: 59396--59699 Score: 484
Period size: 124 Copynumber: 2.4 Consensus size: 125
59386 AAGTTGTGAT
* * * *
59396 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGAAGACAAGATTCAGACCAAGGAGGTATTAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAA
* *
59461 GAATGAGCCTTACAATTTGAGGTGTTGGGGCATTTTG-ATGCCCGTACCAGTATAAGATA
66 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
*
59520 ATGTTGGGGCATGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAA
* *
59585 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACTAGTGTAAGATA
66 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* ** *
59645 ATGTTGGGGCGCGACCAAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAG
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAG
59700 AAATTATTGA
Statistics
Matches: 165, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
124 96 0.58
125 69 0.42
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (125 bp):
ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAA
GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
Found at i:60468 original size:36 final size:36
Alignment explanation
Indices: 60422--60687 Score: 281
Period size: 36 Copynumber: 7.4 Consensus size: 36
60412 AGCAAAGTCA
*
60422 ATCTTAAGCCTTCACCGAAGAGA-AGTGAAGCAAACC
1 ATCTGAAGCCTTCACCGAAGA-ATAGTGAAGCAAACC
* *
60458 ATCTGAAGCCTTCACTGGAGAATAGTGAAGCAAACC
1 ATCTGAAGCCTTCACCGAAGAATAGTGAAGCAAACC
* *
60494 ATCCT-AAGCCTTCACCGGAGAATAGTGAAGCTAACC
1 AT-CTGAAGCCTTCACCGAAGAATAGTGAAGCAAACC
* * *
60530 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAATCA
1 ATCTGAAGCCTTCACCGAAGAATAGTGAAGCAAACC
*
60566 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACC
1 ATCTGAAGCCTTCACCGAAGAATAGTGAAGCAAACC
* * *
60602 ATCAT-AAGTCTTCACC-AGAGAGTAGTGAAGCCAACC
1 ATC-TGAAGCCTTCACCGA-AGAATAGTGAAGCAAACC
* * * *
60638 ATCTTAAGTCTTCACC-AAAAAGTAGTGAAGCAGATCC
1 ATCTGAAGCCTTCACCGAAGAA-TAGTGAAGCA-AACC
* *
60675 ATTTTAAGCCTTC
1 ATCTGAAGCCTTC
60688 TCAGAAGAGT
Statistics
Matches: 202, Mismatches: 20, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
35 6 0.03
36 179 0.89
37 17 0.08
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (36 bp):
ATCTGAAGCCTTCACCGAAGAATAGTGAAGCAAACC
Found at i:60616 original size:108 final size:108
Alignment explanation
Indices: 60422--60669 Score: 354
Period size: 108 Copynumber: 2.3 Consensus size: 108
60412 AGCAAAGTCA
* *
60422 ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCTGAAGCCTTCACTGGAGAATAGTGAA
1 ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACAATCTGAAGCCTTCACCGGAGAATAGTGAA
* * *
60487 GCAAACCATCCTAAGCCTTCACCGGAGAATAGTGAAGCTAACC
66 GCAAACCATCATAAGCCTTCACCAGAGAATAGTGAAGCCAACC
* * *
60530 ATCTGAAGCCTTCACCGGAGA-ATAGTGAAGCAATCAATCTGAAGCCTTCACCGGAGAATAGTGA
1 ATCTTAAGCCTTCACCGAAGAGA-AGTGAAGCAAACAATCTGAAGCCTTCACCGGAGAATAGTGA
* *
60594 AGCAAACCATCATAAGTCTTCACCAGAGAGTAGTGAAGCCAACC
65 AGCAAACCATCATAAGCCTTCACCAGAGAATAGTGAAGCCAACC
* * * *
60638 ATCTTAAGTCTTCACCAAAAAGTAGTGAAGCA
1 ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCA
60670 GATCCATTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 1 0.01
108 121 0.99
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (108 bp):
ATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACAATCTGAAGCCTTCACCGGAGAATAGTGAA
GCAAACCATCATAAGCCTTCACCAGAGAATAGTGAAGCCAACC
Found at i:61417 original size:53 final size:53
Alignment explanation
Indices: 61067--61423 Score: 449
Period size: 51 Copynumber: 6.8 Consensus size: 53
61057 TGAAGATATG
*
61067 CGAGTTCTATACTCCTTAAAGAAAGAAGGAACGAACCCGTTTG-A-AGATGTT
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
* *
61118 CGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCTGTTTGAAGAGATG-T
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
* * * * * * * *
61170 CTAAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGTG-A-AGATATC
1 C-GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
* *
61222 CGAGTTCCATACTCCTTAATGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTT
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
* * **
61273 CGAGTTCTATACTCTTTAAAGAGAGAAGGAGCGAACCCGTAAGAAGAAGATGTT
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAG-AGATGTT
61327 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
* * * * *
61380 CGAGTTCTATACTCCCTAGAGAAATAGGGAGCGAACCCATTTGA
1 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
61424 TGAAGATTGT
Statistics
Matches: 265, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
51 123 0.46
52 6 0.02
53 87 0.33
54 49 0.18
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (53 bp):
CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTT
Found at i:61567 original size:55 final size:54
Alignment explanation
Indices: 61424--61792 Score: 523
Period size: 53 Copynumber: 6.9 Consensus size: 54
61414 ACCCATTTGA
* * * *
61424 TGAAGATTG-T-GAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGT
1 TGAAGATTGTTGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
*
61477 TGAAGATTG-TGGCTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
1 TGAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
* * *
61530 TGAAGATTGTTCGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTGTT-GGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
61585 TGAAGATTGTTGG-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
1 TGAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
* * * * *
61638 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGATTGA
1 TGAAGATTGTTGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
* *
61693 TGAAGATT-ATGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
1 TGAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
*
61746 TGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 TGAAGATTGTT-GGATCTTATACTCTCTGAAGAAATAGGGGGCAGAC
61793 AAGTTTGTTG
Statistics
Matches: 284, Mismatches: 25, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
53 148 0.52
54 7 0.02
55 129 0.45
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (54 bp):
TGAAGATTGTTGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATCGT
Found at i:61575 original size:108 final size:107
Alignment explanation
Indices: 61437--61807 Score: 609
Period size: 108 Copynumber: 3.4 Consensus size: 107
61427 AGATTGTGAG
* *
61437 TCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTGGCTCTTATACTCTC
1 TCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGATGAAGATTGTGG-TCTTATACTCTC
61502 TGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGA
65 TGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGA
*
61545 TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTGTTGGTCTTATACTCTC
1 TCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGATGAAGATTG-TGGTCTTATACTCTC
61610 TGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTC-GA
65 TGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGA
** *
61652 GTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGATTGATGAAGATTATGGGTCTTATACTCT
1 -TCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGATGAAGATTGT-GGTCTTATACTCT
*
61717 CTGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGG
64 CTGAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGA
* * *
61761 TCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTTTGTTGAAGAT
1 TCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGATGAAGAT
61808 GATTCAAGAC
Statistics
Matches: 248, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
107 3 0.01
108 241 0.97
109 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (107 bp):
TCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGATGAAGATTGTGGTCTTATACTCTCT
GAAGAAATAGGGGGCAGACGCAATCGTTGAAGATTGTTCGGA
Found at i:61821 original size:55 final size:53
Alignment explanation
Indices: 61424--61840 Score: 451
Period size: 55 Copynumber: 7.7 Consensus size: 53
61414 ACCCATTTGA
* *
61424 TGAAGATTG-T-GAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGT
1 TGAAGATTGTTCG-GTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAG-TTGT
*
61477 TGAAGATTG-T-GGCTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAA-TCGT
1 TGAAGATTGTTCGG-TCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTTGT
** *
61530 TGAAGATTGTTCGGATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTGTTCGG-TCTTATACTCTCTGAAGAAATAGGGGGCAGACAAG-TTGT
*
61585 TGAAGATTGTT-GGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAA-TCGT
1 TGAAGATTGTTCGGTCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTTGT
* *
61638 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGA-TTGA
1 TGAAGATTGTTCG-GTCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTTGT
* * *
61693 TGAAGATT-ATGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAA-TCGT
1 TGAAGATTGTTCGGTCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTTGT
61746 TGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTTTGT
1 TGAAGATTGTTC-GGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAG-TTGT
* * * *
61801 TGAAGA-TGATTCAAGACTTATACCCTCTGAAAAAATAGGG
1 TGAAGATTG-TTC-GGTCTTATACTCTCTGAAGAAATAGGG
61841 AGCGAACCCA
Statistics
Matches: 318, Mismatches: 30, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
52 1 0.00
53 146 0.46
54 9 0.03
55 162 0.51
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (53 bp):
TGAAGATTGTTCGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTTGT
Found at i:71278 original size:3 final size:3
Alignment explanation
Indices: 71272--71303 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
71262 ATAATAATAC
71272 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
71304 AAAAATGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:71472 original size:3 final size:3
Alignment explanation
Indices: 71464--71520 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
71454 ACTCTTTTAC
71464 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
71512 ATT ATT ATT
1 ATT ATT ATT
71521 TTTGCTTGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:74776 original size:28 final size:29
Alignment explanation
Indices: 74725--74798 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
74715 AACTTACCAC
* *
74725 AAATCCTCAAATCATACATCCTAAACTCT
1 AAATCCTCAAATCATAAATCCTAAACTAT
74754 AAAT-CTCAAATCATAAAAT-CTAAACTAT
1 AAATCCTCAAATCAT-AAATCCTAAACTAT
* *
74782 AAACCCT-AAATCTTAAA
1 AAATCCTCAAATCATAAA
74799 CTCTAACCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 3 0.08
28 27 0.69
29 9 0.23
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (29 bp):
AAATCCTCAAATCATAAATCCTAAACTAT
Found at i:74794 original size:20 final size:20
Alignment explanation
Indices: 74769--74811 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
74759 TCAAATCATA
74769 AAATC-TAAACTATAAACCCT
1 AAATCTTAAACTAT-AACCCT
*
74789 AAATCTTAAACTCTAACCCT
1 AAATCTTAAACTATAACCCT
74809 AAA
1 AAA
74812 AAGAAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATCTTAAACTATAACCCT
Found at i:74962 original size:2 final size:2
Alignment explanation
Indices: 74955--74988 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74945 GTGTAATTGG
74955 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74989 GAGATAGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76860 original size:31 final size:32
Alignment explanation
Indices: 76819--76899 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 32
76809 AAAGGCAGTT
**
76819 AAACGAAAGTGACCAAATCA-TAATTAAAGTG
1 AAACGAAAGTGACCAAATCATTAATTAAAACG
* *
76850 AAACAAAAGTGGCCAAAT-ATTAATTAAAACG
1 AAACGAAAGTGACCAAATCATTAATTAAAACG
*
76881 AAATGAAAGTGACCAAATC
1 AAACGAAAGTGACCAAATC
76900 TTTTTTTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.19
Consensus pattern (32 bp):
AAACGAAAGTGACCAAATCATTAATTAAAACG
Found at i:77703 original size:22 final size:22
Alignment explanation
Indices: 77648--77704 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
77638 TAAAATCCAA
* *
77648 GTACTCATATTTTTAAGTCACGG
1 GTAC-CATATTTTGAAGTCAAGG
* *
77671 GTAACCGTATTTTGAGGTCAAGG
1 GT-ACCATATTTTGAAGTCAAGG
77694 GTACCATATTT
1 GTACCATATTT
77705 ATTTATTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 8 0.29
23 18 0.64
24 2 0.07
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (22 bp):
GTACCATATTTTGAAGTCAAGG
Found at i:80119 original size:6 final size:6
Alignment explanation
Indices: 80111--80181 Score: 124
Period size: 6 Copynumber: 11.8 Consensus size: 6
80101 GTATATGTAT
* *
80111 GTGTGT GTGTGT GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
1 GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC GTGTGC
80159 GTGTGC GTGTGC GTGTGC GTGTG
1 GTGTGC GTGTGC GTGTGC GTGTG
80182 TGTATACTGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.00, C:0.13, G:0.51, T:0.37
Consensus pattern (6 bp):
GTGTGC
Found at i:80412 original size:4 final size:4
Alignment explanation
Indices: 80405--81036 Score: 1239
Period size: 4 Copynumber: 158.2 Consensus size: 4
80395 CGTGTGTGTA
*
80405 TATG TATG TATG TATG TATG TATG TATG TATA TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80453 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80501 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80549 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80597 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80645 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80692 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80740 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80788 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80836 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80884 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80932 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80980 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
81028 TATG CATG T
1 TATG TATG T
81037 GAGATAGGAT
Statistics
Matches: 623, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
3 3 0.00
4 620 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:84233 original size:48 final size:48
Alignment explanation
Indices: 84184--84411 Score: 161
Period size: 48 Copynumber: 4.7 Consensus size: 48
84174 ACTGCCGCCT
* *
84184 TATGTGTATAAGTCTCCACCACCACCATCACCTTCTCCTCCACCTCCT
1 TATGTGTATAAGTCTCCACCACCACCATCACCTTCACCTCCACCTCCA
* * * * * * * * *
84232 TATGAGTACAAGTCTCCACCTCCTCCATCTCCATCACCACCTCCTCCG
1 TATGTGTATAAGTCTCCACCACCACCATCACCTTCACCTCCACCTCCA
* * * * * **** *
84280 TATGTTTATAAGTCTCCACCGCCACCACCTAAAC-ACGAGGAGCAGCCCCCA
1 TATGTGTATAAGTCTCCACCACCACCA--TCACCTTC-ACCTCCA-CCTCCA
* * * * *
84331 TACGTCTATAAGTCTCCACCACCACCTTCACCATCCCCTCCACCTCCA
1 TATGTGTATAAGTCTCCACCACCACCATCACCTTCACCTCCACCTCCA
* *
84379 TACGTGTATAAGTCTCCACCACCACCACCACCT
1 TATGTGTATAAGTCTCCACCACCACCATCACCT
84412 AAACACGAGG
Statistics
Matches: 133, Mismatches: 42, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
48 94 0.71
49 6 0.05
50 6 0.05
51 27 0.20
ACGTcount: A:0.24, C:0.44, G:0.09, T:0.23
Consensus pattern (48 bp):
TATGTGTATAAGTCTCCACCACCACCATCACCTTCACCTCCACCTCCA
Found at i:84251 original size:45 final size:45
Alignment explanation
Indices: 84122--84251 Score: 125
Period size: 48 Copynumber: 2.8 Consensus size: 45
84112 TATATTTATT
* * * * **
84122 CTTCGCCTCCACCTCCTTATAAGTACAAATCACCACCACCACCTT
1 CTTCTCCTCCACCTCCTTATGAGTACAAGTCTCCACCACCACCAC
* ** * * *
84167 CTTCTCCACTGCCGCCTTATGTGTATAAGTCTCCACCACCACCATCAC
1 CTTCTCCTCCACCTCCTTATGAGTACAAGTCTCCACCACCA-C--CAC
84215 CTTCTCCTCCACCTCCTTATGAGTACAAGTCTCCACC
1 CTTCTCCTCCACCTCCTTATGAGTACAAGTCTCCACC
84252 TCCTCCATCT
Statistics
Matches: 64, Mismatches: 18, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
45 31 0.48
46 1 0.02
48 32 0.50
ACGTcount: A:0.22, C:0.43, G:0.08, T:0.27
Consensus pattern (45 bp):
CTTCTCCTCCACCTCCTTATGAGTACAAGTCTCCACCACCACCAC
Found at i:84389 original size:99 final size:99
Alignment explanation
Indices: 84238--85349 Score: 1634
Period size: 99 Copynumber: 11.2 Consensus size: 99
84228 TCCTTATGAG
* * * * * * * * * * *
84238 TACAAGTCTCCACCTCCTCCATCTCCATCACCACCTCCTCCGTATGTTTATAAGTCTCCACCGCC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
*
84303 ACCACCTAAACACGAGGAGCAGCCCCCATACGT-C
66 ACCACCGAAACACGAGGAGCAGCCCCCATAC-TAC
* * * *
84337 TATAAGTCTCCACCACCACCTTCACCATCCCCTCCACCTCCATACGTGTATAAGTCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCT---CCACC
* *
84402 ACCACCACCTAAACACGAGGAGCAGCCCCCGTACTAC
63 ACCACCACCGAAACACGAGGAGCAGCCCCCATACTAC
* * *
84439 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACATATACAAATCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* *
84504 ACCACCAAAACACGAGGAGCAACCCCCATACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
* *
84538 TACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCTTACGTCTACAAGTCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* * * *
84603 TCCACCTAAACATGAGGAGCAACCCCCATACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
* * * *
84637 TACAAGTCTCCTCCACCACCTTCACCATCCCCACCACCTCCATACGTTTACAAATCTCCTCCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* * *
84702 ACCACCAAAACACGAGGAGCAGCCCCCGTACTAT
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
* * *
84736 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTTTACAAATCTCCTCCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* * *
84801 ACCACCAAAACATGAGGAGCAGCCCCCGTACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
84835 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
*
84900 ACCACCGAAACACGAGGAGCAGCCCCCGTACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
* * *
84934 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTATAAATCCCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* *
84999 ACCACCGAAACATGTA-GAGCTGCCCCCATACTAC
66 ACCACCGAAACACG-AGGAGCAGCCCCCATACTAC
* * * * * *
85033 TACAAGTCTCCTCCACCACCTTCCCCATCCCCACCACTTCCATACGTCTACAAGTCCCCTCCTCC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
85098 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
*
85132 TACAAGTCTCCACCACCACCTTCACCATCCCCCCCACCTCCATACGTCTACAAGTCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
*
85197 ACCACCGAAGCACGAGGAGCAGCCCCCATACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
*
85231 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATATGTCTACAAGTCTCCACCACC
1 TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
* *
85296 ACCACCGAAGCACGAAGAGCAGCCCCCATACTAC
66 ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
85330 TACAAGTCTCCACCACCACC
1 TACAAGTCTCCACCACCACC
85350 GGTGAAATCT
Statistics
Matches: 933, Mismatches: 74, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
98 1 0.00
99 841 0.90
100 1 0.00
101 1 0.00
102 89 0.10
ACGTcount: A:0.28, C:0.46, G:0.09, T:0.17
Consensus pattern (99 bp):
TACAAGTCTCCACCACCACCTTCACCATCCCCACCACCTCCATACGTCTACAAGTCTCCACCACC
ACCACCGAAACACGAGGAGCAGCCCCCATACTAC
Found at i:85343 original size:48 final size:48
Alignment explanation
Indices: 84400--85350 Score: 257
Period size: 48 Copynumber: 19.2 Consensus size: 48
84390 GTCTCCACCA
* * * *
84400 CCACCACCACCTAAACACGAGGAGCAGCCCCCGTACTACTACAAGTCT
1 CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * * * * *
84448 CCACCACCACCTTCACCATC-CCCACCA-CCTCCATACATA-TACAAATCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGTCT
* * * *
84496 CCACCACCACCACCAAAACACGAGGAGCAACCCCCATACTACTACAAGTCT
1 ---CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
* ** * * * * *
84547 CCTCCACCACCTTCACCATC-CCCACCA-CCTCCTTACGT-CTACAAGTCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGTCT
* * * * *
84595 CCACCACCTCCACCTAAACATGAGGAGCAACCCCCATACTACTACAAGTCT
1 CCACCA---CCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
* ** * * * * * *
84646 CCTCCACCACCTTCACCATC-CCCACCA-CCTCCATACGT-TTACAAATCTCCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTAC-AA-GT-CT
* * * * *
84697 CCACCACCACCAAAACACGAGGAGCAGCCCCCGTACTATTACAAGTCT
1 CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * * * * * *
84745 CCACCACCACCTTCACCATC-CCCACCA-CCTCCATACGT-TTACAAATCTCCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTAC-AA-GT-CT
* * * * *
84796 CCACCACCACCAAAACATGAGGAGCAGCCCCCGTACTACTACAAGTCT
1 CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * * * *
84844 CCACCACCACCTTCACCATC-CCCACCA-CCTCCATACGT-CTACAAGTCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGTCT
* * *
84892 CCACCACCACCACCGAAACACGAGGAGCAGCCCCCGTACTACTACAAGTCT
1 ---CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * * * * * * *
84943 CCACCACCACCTTCACCATC-CCCACCA-CCTCCATACGT-CTATAAATCCCCA
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGT---CT
* * *
84994 CCACCACCACCGAAACATGTA-GAGCTGCCCCCATACTACTACAAGTCT
1 CCACCACCACCGAACCACG-ACGAGCAGCCCCCATACTACTACAAGTCT
* *** * * * **
85042 CCTCCACCACCTTCCCCATC-CCCACCA-CTTCCATACGT-CTACAAGTCCCCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGT---CT
* * *
85093 CCTCCACCACCGAAACACGAGGAGCAGCCCCCATACTACTACAAGTCT
1 CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * *** *
85141 CCACCACCACCTTCACCATC-CCCCCCA-CCTCCATACGT-CTACAAGTCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATAC-TACTACAAGTCT
* *
85189 CCACCACCACCACCGAAGCACGAGGAGCAGCCCCCATACTACTACAAGTCT
1 ---CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
** * * * * *
85240 CCACCACCACCTTCACCATC-CCCACCA-CCTCCATA-TGTCTACAAGTCT
1 CCACCACCACC-GAACCA-CGACGAGCAGCCCCCATACT-ACTACAAGTCT
* *
85288 CCACCACCACCACCGAAGCACGAAGAGCAGCCCCCATACTACTACAAGTCT
1 ---CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
85339 CCACCACCACCG
1 CCACCACCACCG
85351 GTGAAATCTC
Statistics
Matches: 636, Mismatches: 184, Indels: 166
0.65 0.19 0.17
Matches are distributed among these distances:
47 1 0.00
48 248 0.39
49 74 0.12
50 73 0.11
51 239 0.38
52 1 0.00
ACGTcount: A:0.29, C:0.47, G:0.09, T:0.16
Consensus pattern (48 bp):
CCACCACCACCGAACCACGACGAGCAGCCCCCATACTACTACAAGTCT
Found at i:86364 original size:36 final size:36
Alignment explanation
Indices: 86324--86442 Score: 123
Period size: 36 Copynumber: 3.3 Consensus size: 36
86314 TTACGTCTAC
* * *
86324 AAGTCACCACCTCCACCGGCTCCTACTTATGTTTAT
1 AAGTCACCACCACCACCAGCTCCTACCTATGTTTAT
* * * * *
86360 AAGTCACCACCACCTCCAACACCCACCTATGTTTAC
1 AAGTCACCACCACCACCAGCTCCTACCTATGTTTAT
* * *
86396 AAATCTCCACCACCACCAAG-TCCTACCTATGTCTAT
1 AAGTCACCACCACCACC-AGCTCCTACCTATGTTTAT
86432 AAGTCACCACC
1 AAGTCACCACC
86443 TCCTCCACCA
Statistics
Matches: 64, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
36 63 0.98
37 1 0.02
ACGTcount: A:0.29, C:0.40, G:0.08, T:0.24
Consensus pattern (36 bp):
AAGTCACCACCACCACCAGCTCCTACCTATGTTTAT
Found at i:86556 original size:36 final size:35
Alignment explanation
Indices: 86507--86694 Score: 163
Period size: 36 Copynumber: 5.4 Consensus size: 35
86497 CCCATACTAC
*
86507 TACAAGTCCCCACCACCACCAAGCCCTACTTACGTT
1 TACAAGTCACCACCACCACCAA-CCCTACTTACGTT
* * * *
86543 TACAAGTCGCCACCACCATCGACCCCTACTTATGTT
1 TACAAGTCACCACCACCA-CCAACCCTACTTACGTT
* *
86579 TACAAGTCACCACCTCCTCC--CCCATAC-TAC---
1 TACAAGTCACCACCACCACCAACCC-TACTTACGTT
* * *
86609 TACAAGTCCCCACCACCACCAACTCCCACATACGTT
1 TACAAGTCACCACCACCACCAAC-CCTACTTACGTT
* * * *
86645 TACAAATCACCACCACCACCAACACCCACCTATGTT
1 TACAAGTCACCACCACCACCAAC-CCTACTTACGTT
86681 TACAAGTCACCACC
1 TACAAGTCACCACC
86695 TCCTCCTCCA
Statistics
Matches: 124, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
30 17 0.14
32 3 0.02
33 10 0.08
34 3 0.02
35 1 0.01
36 88 0.71
37 2 0.02
ACGTcount: A:0.30, C:0.45, G:0.06, T:0.19
Consensus pattern (35 bp):
TACAAGTCACCACCACCACCAACCCTACTTACGTT
Found at i:86611 original size:102 final size:102
Alignment explanation
Indices: 86495--86877 Score: 423
Period size: 102 Copynumber: 3.6 Consensus size: 102
86485 TGTTGTGAAC
* * *
86495 CCCCCATACTACTACAAGTCCCCACCACCACCAAGC-CCTACTTACGTTTACAAGTCGCCACCAC
1 CCCCCATACTACTACAAGTCCCCACCACCACCAAGCACCCACATACGTTTACAAGTCACCACCAC
* * *
86559 CATCGACCCCTACTTATGTTTACAAGTCACCACCTCCT
66 CACCAACCCC-ACATATGTTTACAAGTCACCACCTCCT
* *
86597 CCCCCATACTACTACAAGTCCCCACCACCACCAA-CTCCCACATACGTTTACAAATCACCACCAC
1 CCCCCATACTACTACAAGTCCCCACCACCACCAAGCACCCACATACGTTTACAAGTCACCACCAC
*
86661 CACCAACACCCACCTATGTTTACAAGTCACCACCTCCT
66 CACCAAC-CCCACATATGTTTACAAGTCACCACCTCCT
* * *
86699 CCTCCATACTACTACAAGTCTCCACCACCACCGAAGCATGTAGAGAATCCCCCATAC-TATTACA
1 CCCCCATACTACTACAAGTCCCCACCACCACC-AAGC---------A-CCCACATACGT-TTACA
* * * *
86763 AGTCTCCGCCGCCACCAAGTCCCACATATGTTTACAAGTCACCACCTCCT
54 AGTCACCACCACCACCAA-CCCCACATATGTTTACAAGTCACCACCTCCT
* * **
86813 CCTCCATACTACTACAAGTCTCCACCACCACCAAGC-CCCACATATATTTACAAGTCACCACCAC
1 CCCCCATACTACTACAAGTCCCCACCACCACCAAGCACCCACATACGTTTACAAGTCACCACCAC
86877 C
66 C
86878 TCCGTACTAC
Statistics
Matches: 242, Mismatches: 22, Indels: 34
0.81 0.07 0.11
Matches are distributed among these distances:
101 1 0.00
102 141 0.58
103 6 0.02
104 1 0.00
113 5 0.02
114 88 0.36
ACGTcount: A:0.30, C:0.44, G:0.07, T:0.20
Consensus pattern (102 bp):
CCCCCATACTACTACAAGTCCCCACCACCACCAAGCACCCACATACGTTTACAAGTCACCACCAC
CACCAACCCCACATATGTTTACAAGTCACCACCTCCT
Found at i:86865 original size:36 final size:36
Alignment explanation
Indices: 86758--86877 Score: 101
Period size: 36 Copynumber: 3.5 Consensus size: 36
86748 CCCCATACTA
* * * *
86758 TTACAAGTCTCCGCCGCCACCAAGTCCCACATATGT
1 TTACAAGTCTCCACCACCACCAAGCCCCACATATAT
* * *
86794 TTACAAG--T-CACCACCTCC--TCCTC-CATACTA-
1 TTACAAGTCTCCACCACCACCAAGCCCCACATA-TAT
*
86824 CTACAAGTCTCCACCACCACCAAGCCCCACATATAT
1 TTACAAGTCTCCACCACCACCAAGCCCCACATATAT
*
86860 TTACAAGTCACCACCACC
1 TTACAAGTCTCCACCACC
86878 TCCGTACTAC
Statistics
Matches: 63, Mismatches: 13, Indels: 16
0.68 0.14 0.17
Matches are distributed among these distances:
30 10 0.16
31 3 0.05
32 1 0.02
33 16 0.25
34 1 0.02
35 5 0.08
36 27 0.43
ACGTcount: A:0.29, C:0.42, G:0.07, T:0.21
Consensus pattern (36 bp):
TTACAAGTCTCCACCACCACCAAGCCCCACATATAT
Found at i:86867 original size:252 final size:253
Alignment explanation
Indices: 86319--86877 Score: 634
Period size: 252 Copynumber: 2.2 Consensus size: 253
86309 CCGGTTTACG
* * * * * * *
86319 TCTACAAGTCACCACCTCCACCGGCTCCTACTTATGTTTATAAGTCACCACCACCTCCAACACCC
1 TCTACAAGTCTCCACCACCACC-GC-CCCACATATATTTACAAGTCACCACCACCACCAACACCC
* * * ** * *
86384 ACCTATGTTTACAAATCTCCACCACCACCAAGTCCTACCTATGTCTATAAGTCACCACCTCCTCC
64 ACATACGTTTACAAATCACCACCACCACCAACACCCACCTATGTCTACAAGTCACCACCTCCTCC
* * *
86449 ACCATATTACTACAAGTCTCCACCACCACCAAAGCATGTTGTGAACCCCCCATACTACTACAAGT
129 ACCATACTACTACAAGTCTCCACCACCACCAAAGCATGTAGAGAACCCCCCATACTACTACAAGT
* * *
86514 CCCCACCACCACCAAGCCCTACTTACGTTTACAAGTCGCCACCACCATCGACCCCTACTTA
194 CCCCACCACCACCAAGCCCTACATACGTTTACAAGTCACCACCACCATC-ACCCATACTTA
* * * * * *
86575 TGTTTACAAG--T-CACCACCTCCTCCCC-CATACTA-CTACAAGTCCCCACCACCACCAACTCC
1 --TCTACAAGTCTCCACCACCACCGCCCCACATA-TATTTACAAGTCACCACCACCACCAACACC
*
86635 CACATACGTTTACAAATCACCACCACCACCAACACCCACCTATGTTTACAAGTCACCACCTCCTC
63 CACATACGTTTACAAATCACCACCACCACCAACACCCACCTATGTCTACAAGTCACCACCTCCTC
* * * *
86700 CTCCATACTACTACAAGTCTCCACCACCACCGAAGCATGTAGAGAATCCCCCATACTATTACAAG
128 CACCATACTACTACAAGTCTCCACCACCACCAAAGCATGTAGAGAACCCCCCATACTACTACAAG
* * * * *
86765 TCTCCGCCGCCACCAAGTCCC-ACATATGTTTACAAGTCACCACCTCC-TC-CTCCATAC-TA
193 TCCCCACCACCACCAAG-CCCTACATACGTTTACAAGTCACCACCACCATCAC-CCATACTTA
86824 -CTACAAGTCTCCACCACCACCAAGCCCCACATATATTTACAAGTCACCACCACC
1 TCTACAAGTCTCCACCACCACC--GCCCCACATATATTTACAAGTCACCACCACC
86878 TCCGTACTAC
Statistics
Matches: 250, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
246 6 0.02
248 1 0.00
249 12 0.05
250 5 0.02
251 8 0.03
252 196 0.78
253 6 0.02
254 1 0.00
255 8 0.03
258 7 0.03
ACGTcount: A:0.29, C:0.42, G:0.07, T:0.21
Consensus pattern (253 bp):
TCTACAAGTCTCCACCACCACCGCCCCACATATATTTACAAGTCACCACCACCACCAACACCCAC
ATACGTTTACAAATCACCACCACCACCAACACCCACCTATGTCTACAAGTCACCACCTCCTCCAC
CATACTACTACAAGTCTCCACCACCACCAAAGCATGTAGAGAACCCCCCATACTACTACAAGTCC
CCACCACCACCAAGCCCTACATACGTTTACAAGTCACCACCACCATCACCCATACTTA
Found at i:86891 original size:63 final size:64
Alignment explanation
Indices: 86750--86907 Score: 228
Period size: 66 Copynumber: 2.5 Consensus size: 64
86740 AGAGAATCCC
* * * * * *
86750 CCATACTATTACAAGTCTCCGCCGCCACCAAGTCCCACATATGTTTACAAGTCACCACCTCCTCC
1 CCATACTACTACAAGTCTCCACCACCACCAAGCCCCACATATATTTACAAGTCACCA-C-CCACC
86815 T
64 T
86816 CCATACTACTACAAGTCTCCACCACCACCAAGCCCCACATATATTTACAAGTCACCA-CCACCT
1 CCATACTACTACAAGTCTCCACCACCACCAAGCCCCACATATATTTACAAGTCACCACCCACCT
*
86879 CCGTACTACTACAAGTCTCCACCACCACC
1 CCATACTACTACAAGTCTCCACCACCACC
86908 GGTCTACTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
63 33 0.39
66 52 0.61
ACGTcount: A:0.29, C:0.43, G:0.07, T:0.21
Consensus pattern (64 bp):
CCATACTACTACAAGTCTCCACCACCACCAAGCCCCACATATATTTACAAGTCACCACCCACCT
Found at i:86914 original size:27 final size:27
Alignment explanation
Indices: 86861--86955 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
86851 CACATATATT
*
86861 TACAAGTCACCACCACCTCCGTACTAC
1 TACAAGTCACCACCACCACCGTACTAC
*
86888 TACAAGTCTCCACCACCACCGGT-CTAC
1 TACAAGTCACCACCACCACC-GTACTAC
*
86915 T-C---T--CCACCACCACCATACTAC
1 TACAAGTCACCACCACCACCGTACTAC
* *
86936 TACAAGTCCCCACCTCCACC
1 TACAAGTCACCACCACCACC
86956 ACCAAAACAC
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
20 1 0.02
21 16 0.29
22 1 0.02
23 1 0.02
25 1 0.02
26 1 0.02
27 33 0.59
28 2 0.04
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.18
Consensus pattern (27 bp):
TACAAGTCACCACCACCACCGTACTAC
Found at i:86935 original size:21 final size:21
Alignment explanation
Indices: 86894--86936 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
86884 CTACTACAAG
*
86894 TCTCCACCACCACCGGTCTAC
1 TCTCCACCACCACCGATCTAC
86915 TCTCCACCACCACC-ATACTAC
1 TCTCCACCACCACCGAT-CTAC
86936 T
1 T
86937 ACAAGTCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.23, C:0.51, G:0.05, T:0.21
Consensus pattern (21 bp):
TCTCCACCACCACCGATCTAC
Found at i:86941 original size:48 final size:48
Alignment explanation
Indices: 86870--87674 Score: 377
Period size: 48 Copynumber: 16.7 Consensus size: 48
86860 TTACAAGTCA
* * * ** *
86870 CCACCACCTCCGTACTACTACAAGTCTCCACCACCACCGGTCTACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * ** ***
86918 CCACCACCACCATACTACTACAAGTCCCCACCTCCACCACCAAAACACGAA
1 CCACCACCACCATACTACTACAAATCTCCA---CCACCACCAATCCACTCT
** * * * *
86969 GAACAACCCCCATACTACTACAAATCTCCTCCCCCACC-ATCGC-CGTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATC-CAC-TCT
* * * * * *
87017 CCTCCTCCACCATACTATTACAAATCCCCGCCACCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * * *
87065 CCACCTCCACCATACTATTACAAATCACCACCACCACCAGTCCATTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * * ** **
87113 CCTCCTCCACCATACTACTACAAGTCCCCACCCCCACCACCAAAACAC-AA
1 CCACCACCACCATACTACTACAAATCTCCA---CCACCACCAATCCACTCT
** ** * * * *
87163 AGAGGAACCCCCGTACTACTACAAATCCCCACCACCACCAGTCCACTCT
1 CCA-CCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * * ** ***
87212 CCACCTCCACCATACTATTACAAGTCCCCACCCCCACCACCAAAACACGAA
1 CCACCACCACCATACTACTACAAATCTCCA---CCACCACCAATCCACTCT
** * * *
87263 GAACAACCCCCATACTACTACAAATCTCCTCCACCACC-ATCGC-CATCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATC-CAC-TCT
* * * *
87311 ---CCTCCACCATATTATTACAAATCTCCACCACCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * ** *
87356 CCACCTCCACCATACTACTACAAATCACCCCCACCACCGGTTCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * *
87404 CCACCACCACCCTACTACTACAAGTCTCCACCACCACCAGTCCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * ** **
87452 ---CCACCACCATATTACTACAAATCACC-CCACCTCCAATAAAGGCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * * * * * *
87496 CCGCCACCTACC-TACCATTACAACTCTCCTCCTCCACC-AT-CACCATCA
1 CCACCACC-ACCATACTACTACAAATCTCCACCACCACCAATCCA-C-TCT
* * * * * *
87544 CCTCCACCCCCATACTACTACAAGTCCCCACCGCCTCC-ATCGCCATCTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAAT--CCA-CTCT
* * * * ** *
87594 TCA--TCCACCATACTACTACAAATCACCCCCACCACCGGTTCACTCT
1 CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
* * *
87640 CCGCCACCACCATACTACTACAAGTCTCCCCCACC
1 CCACCACCACCATACTACTACAAATCTCCACCACC
87675 CCCAGTAGAA
Statistics
Matches: 561, Mismatches: 160, Indels: 72
0.71 0.20 0.09
Matches are distributed among these distances:
44 12 0.02
45 55 0.10
46 9 0.02
47 27 0.05
48 349 0.62
49 5 0.01
50 3 0.01
51 101 0.18
ACGTcount: A:0.29, C:0.49, G:0.05, T:0.18
Consensus pattern (48 bp):
CCACCACCACCATACTACTACAAATCTCCACCACCACCAATCCACTCT
Found at i:86986 original size:99 final size:99
Alignment explanation
Indices: 86882--87442 Score: 491
Period size: 99 Copynumber: 5.8 Consensus size: 99
86872 ACCACCTCCG
* * * *
86882 TACTACTACAAGTCTCCACCACCACCGGTCTACTCTCCACCACCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCATACTACTACAAGTCCCC
*
86947 ACCTCCACCACCAAAACACGAAGAACAACCCCCA
66 ACCCCCACCACCAAAACACGAAGAACAACCCCCA
* * * * *
86981 TACTACTACAAATCTCCTCCCCCACCA-TCGC-CGTCTCCTCCTCCACCATACTATTACAAAT--
1 TACTACTACAAATCTCCACCACCACCAGTC-CAC-TCTCCACCTCCACCATACTACTACAAGTCC
* *** ***** ** *
87042 CC-CCGCCACCACCAGTCCACTCTCCACCTCCACCA
64 CCACCCCCACCACCAAAACACGAAGAACAACCCCCA
* * * *
87077 TACTATTACAAATCACCACCACCACCAGTCCATTCTCCTCCTCCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCATACTACTACAAGTCCCC
* ** *
87142 ACCCCCACCACCAAAACACAAAGAGGAACCCCCG
66 ACCCCCACCACCAAAACACGAAGAACAACCCCCA
* *
87176 TACTACTACAAATCCCCACCACCACCAGTCCACTCTCCACCTCCACCATACTATTACAAGTCCCC
1 TACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCATACTACTACAAGTCCCC
87241 ACCCCCACCACCAAAACACGAAGAACAACCCCCA
66 ACCCCCACCACCAAAACACGAAGAACAACCCCCA
* * * * *
87275 TACTACTACAAATCTCCTCCACCACCA-TCGC-CATCT---CCTCCACCATATTATTACAAATCT
1 TACTACTACAAATCTCCACCACCACCAGTC-CAC-TCTCCACCTCCACCATACTACTACAAGTCC
*** ***** ** *
87335 CCA---CCACCACCAGTCCACTCTCCACCTCCACCA
64 CCACCCCCACCACCAAAACACGAAGAACAACCCCCA
* * * * * * *
87368 TACTACTACAAATCACCCCCACCACCGGTTCACTCTCCACCACCACCCTACTACTACAAGTCTCC
1 TACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCATACTACTACAAGTCCCC
*
87433 ACCACCACCA
66 ACCCCCACCA
87443 GTCCACTCTC
Statistics
Matches: 368, Mismatches: 77, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
93 47 0.13
94 2 0.01
96 117 0.32
97 4 0.01
98 8 0.02
99 190 0.52
ACGTcount: A:0.30, C:0.48, G:0.04, T:0.17
Consensus pattern (99 bp):
TACTACTACAAATCTCCACCACCACCAGTCCACTCTCCACCTCCACCATACTACTACAAGTCCCC
ACCCCCACCACCAAAACACGAAGAACAACCCCCA
Found at i:87101 original size:195 final size:195
Alignment explanation
Indices: 86882--87250 Score: 526
Period size: 195 Copynumber: 1.9 Consensus size: 195
86872 ACCACCTCCG
* * * *
86882 TACTACTACAAGTCTCCACCACCACCGGTCTACTCTCCACCACCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCACCACCACCACCAGTCCACTCTCCACCACCACCATACTACTACAAGTCCCC
* * * * *
86947 ACCTCCACCACCAAAACACGAAGAACAACCCCCATACTACTACAAATCTCCTCCCCCACCA-TCG
66 ACCCCCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCAGTC-
* *
87011 C-CGTCTCCTCCTCCACCATACTATTACAAATCCCCGCCACCACCAGTCCACTCTCCACCTCCAC
130 CAC-TCTCCACCTCCACCATACTATTACAAATCCCCACCACCACCAGTCCACTCTCCACCTCCAC
87075 CA
194 CA
* * * *
87077 TACTATTACAAATCACCACCACCACCAGTCCATTCTCCTCCTCCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCACCACCACCACCAGTCCACTCTCCACCACCACCATACTACTACAAGTCCCC
** *
87142 ACCCCCACCACCAAAACACAAAGAGGAACCCCCGTACTACTACAAATCCCCACCACCACCAGTCC
66 ACCCCCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCAGTCC
* *
87207 ACTCTCCACCTCCACCATACTATTACAAGTCCCCACCCCCACCA
131 ACTCTCCACCTCCACCATACTATTACAAATCCCCACCACCACCA
87251 CCAAAACACG
Statistics
Matches: 152, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
195 149 0.98
196 3 0.02
ACGTcount: A:0.30, C:0.48, G:0.05, T:0.17
Consensus pattern (195 bp):
TACTACTACAAATCACCACCACCACCAGTCCACTCTCCACCACCACCATACTACTACAAGTCCCC
ACCCCCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCAGTCC
ACTCTCCACCTCCACCATACTATTACAAATCCCCACCACCACCAGTCCACTCTCCACCTCCACCA
Found at i:87315 original size:195 final size:193
Alignment explanation
Indices: 86882--87346 Score: 472
Period size: 195 Copynumber: 2.4 Consensus size: 193
86872 ACCACCTCCG
* * * * * *
86882 TACTACTACAAGTCTCCACCACCACCGGTCTACTCTCCACCACCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCACCACCACCACCAGTCCA-T-TCCTCCTCCACCATACTACTACAAGTCCCC
* * * * *
86947 ACCTCCACCACCAAAACACGAAGAACAACCCCCATACTACTACAAATCTCCTCCCCCACCATCGC
64 ACCACCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCATCGC
* * *** *** * **
87012 CGTCTCCTCCTCCACCATACTATTACAAATCCCCGCCACCACCAGTCCACTCTCCACCTCCACCA
129 CGTCTCCACCTCCACCATACTATTACAAATCCCCCCCACCACCAAAACACGAACAACAACCACCA
*
87077 TACTATTACAAATCACCACCACCACCAGTCCATTCTCCTCCTCCACCATACTACTACAAGTCCCC
1 TACTACTACAAATCACCACCACCACCAGTCCA-T-TCCTCCTCCACCATACTACTACAAGTCCCC
* ** *
87142 ACCCCCACCACCAAAACACAAAGAGGAACCCCCGTACTACTACAAATCCCCACCACCACCAGTC-
64 ACCACCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCA-TCG
* *
87206 CAC-TCTCCACCTCCACCATACTATTACAAGTCCCCACCCCCACCACCAAAACACGAAGAACAAC
128 C-CGTCTCCACCTCCACCATACTATTACAAAT--CC-CCCCCACCACCAAAACACGAACAACAAC
*
87270 CCCCA
189 CACCA
* * * * * *
87275 TACTACTACAAATCTCCTCCACCACCA-TCGCCA-T-CTCCTCCACCATATTATTACAAATCTCC
1 TACTACTACAAATCACCACCACCACCAGT--CCATTCCTCCTCCACCATACTACTACAAGTCCCC
87337 ACCACCACCA
64 ACCACCACCA
87347 GTCCACTCTC
Statistics
Matches: 225, Mismatches: 38, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
195 170 0.76
196 4 0.02
197 3 0.01
198 45 0.20
199 3 0.01
ACGTcount: A:0.31, C:0.47, G:0.05, T:0.17
Consensus pattern (193 bp):
TACTACTACAAATCACCACCACCACCAGTCCATTCCTCCTCCACCATACTACTACAAGTCCCCAC
CACCACCACCAAAACACAAAGAACAACCCCCATACTACTACAAATCCCCACCACCACCATCGCCG
TCTCCACCTCCACCATACTATTACAAATCCCCCCCACCACCAAAACACGAACAACAACCACCA
Found at i:87356 original size:21 final size:21
Alignment explanation
Indices: 87332--87460 Score: 71
Period size: 21 Copynumber: 5.6 Consensus size: 21
87322 TTATTACAAA
87332 TCTCCACCACCACCAGTCCAC
1 TCTCCACCACCACCAGTCCAC
*
87353 TCTCCACCTCCACCA-TACTACTAC
1 TCTCCACCACCACCAGT-C--C-AC
* * * *
87377 AAATCACCCCCACCACCGGTTCAC
1 ---TCTCCACCACCACCAGTCCAC
* *
87401 TCTCCACCACCACCCTACTACTACAAG
1 TCTCCACCACCA-CC-AGT-C--C-AC
87428 TCTCCACCACCACCAGTCCAC
1 TCTCCACCACCACCAGTCCAC
87449 TCTCCACCACCA
1 TCTCCACCACCA
87461 TATTACTACA
Statistics
Matches: 80, Mismatches: 14, Indels: 28
0.66 0.11 0.23
Matches are distributed among these distances:
20 1 0.01
21 38 0.47
22 3 0.04
23 2 0.03
24 5 0.06
25 3 0.04
26 3 0.04
27 24 0.30
28 1 0.01
ACGTcount: A:0.26, C:0.53, G:0.04, T:0.17
Consensus pattern (21 bp):
TCTCCACCACCACCAGTCCAC
Found at i:87823 original size:46 final size:48
Alignment explanation
Indices: 87773--87895 Score: 135
Period size: 46 Copynumber: 2.6 Consensus size: 48
87763 CCAGCACCTA
* *
87773 CATACCACTACAACTCCCCTCCTCCACCATCACCATC-TCCCCTCC-C
1 CATACCACTACAACTCCCCTCCACCACCATCACCATCGCCCCCTCCTC
* * *
87819 CATACCACTACAAATCTCCC-CCACCACCATCTCCCTCGCCCCCTCCTC
1 CATACCACTACAACTC-CCCTCCACCACCATCACCATCGCCCCCTCCTC
* * * *
87867 CATACTACTACCACTCACCTCCCCCACCA
1 CATACCACTACAACTCCCCTCCACCACCA
87896 GTGAAATCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
46 29 0.46
47 12 0.19
48 22 0.35
ACGTcount: A:0.23, C:0.58, G:0.01, T:0.19
Consensus pattern (48 bp):
CATACCACTACAACTCCCCTCCACCACCATCACCATCGCCCCCTCCTC
Found at i:89264 original size:23 final size:23
Alignment explanation
Indices: 89208--89269 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
89198 TTGGTCGATT
*
89208 AATTTATATAAAATTTTATAATA
1 AATTTAAATAAAATTTTATAATA
* *
89231 AATATATAATAACATTTT-TAATTA
1 AATTTA-AATAAAATTTTATAA-TA
89255 AATTTAAATATAAAT
1 AATTTAAATA-AAAT
89270 AAATTTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 12 0.39
24 19 0.61
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTTAAATAAAATTTTATAATA
Found at i:89458 original size:53 final size:53
Alignment explanation
Indices: 89359--89460 Score: 127
Period size: 53 Copynumber: 1.9 Consensus size: 53
89349 TTTTTATAAT
* * *
89359 ATTTTCGATAAAACTTTACCTTAAAACATTATTTTTTACTTAAAATGTTTAAC
1 ATTTTCGATAAAACATTACCATAAAACATTATTTTTTACATAAAATGTTTAAC
* *
89412 ATTTTCGGTAAAACATTA-CATAAAATATTATTTTTTTACA-ATAAATGTT
1 ATTTTCGATAAAACATTACCATAAAACATTA-TTTTTTACATA-AAATGTT
89461 AATATTAGGC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 11 0.26
53 31 0.74
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (53 bp):
ATTTTCGATAAAACATTACCATAAAACATTATTTTTTACATAAAATGTTTAAC
Found at i:90756 original size:13 final size:13
Alignment explanation
Indices: 90738--90763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90728 ACATAGTTGA
90738 ACAGTCTTCATAT
1 ACAGTCTTCATAT
90751 ACAGTCTTCATAT
1 ACAGTCTTCATAT
90764 GCTCGTCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
ACAGTCTTCATAT
Found at i:94483 original size:2 final size:2
Alignment explanation
Indices: 94476--94509 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
94466 AATGTTATCG
94476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94510 TATTTTTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96981 original size:3 final size:3
Alignment explanation
Indices: 96902--96972 Score: 72
Period size: 3 Copynumber: 23.7 Consensus size: 3
96892 TTCATTTAAA
* * *
96902 TAT TAT T-T ATAT TAT TAT TAT TAT AAT TAC AAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
96947 AAT AAT TAT TAT TAA TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
96973 AATATTATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
2 1 0.02
3 54 0.96
4 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:97010 original size:21 final size:21
Alignment explanation
Indices: 96986--97038 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
96976 ATTATTTCAA
96986 GCCCAAATCCAACAGTAACCG
1 GCCCAAATCCAACAGTAACCG
97007 GCCCAAATCCAACAGTAACCG
1 GCCCAAATCCAACAGTAACCG
*
97028 ACCCAAATCCA
1 GCCCAAATCCA
97039 GAAGCCCACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.40, C:0.40, G:0.11, T:0.09
Consensus pattern (21 bp):
GCCCAAATCCAACAGTAACCG
Found at i:98634 original size:110 final size:110
Alignment explanation
Indices: 98454--98707 Score: 447
Period size: 110 Copynumber: 2.3 Consensus size: 110
98444 TTTTAATATT
98454 TATTT-TTCAATATCGAAGAAAAGGGCAGTCTTAATACAACTAGATGTCCTATTCTGGTATTTTA
1 TATTTATT-AATATCGAAGAAAAGGGCAGTCTTAATACAACTAGATGTCCTATTCTGGTATTTTA
98518 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
65 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
*
98564 TATTTATTAATATCGAAGAAAAGGGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
1 TATTTATTAATATCGAAGAAAAGGGCAGTCTTAATACAACTAGATGTCCTATTCTGGTATTTTAA
*
98629 AATTAAATATTATAAAAAATTATTATTTTATTTTATTCAAATTAA
66 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
* * *
98674 TATTTATTAATATCAAAGAAAAGAGCTGTCTTAA
1 TATTTATTAATATCGAAGAAAAGGGCAGTCTTAA
98708 GGCACCTAGA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
110 136 0.99
111 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (110 bp):
TATTTATTAATATCGAAGAAAAGGGCAGTCTTAATACAACTAGATGTCCTATTCTGGTATTTTAA
AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
Found at i:98735 original size:110 final size:110
Alignment explanation
Indices: 98454--98741 Score: 371
Period size: 110 Copynumber: 2.6 Consensus size: 110
98444 TTTTAATATT
* * * * * * *
98454 TATTT-TTCAATATCGAAGAAAAGGGCAGTCTTAATACAACTAGATGTCCTATTCTGGTATTTTA
1 TATTTATT-AATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCATATTCCGATATTTTA
98518 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
65 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
* * * * * * * *
98564 TATTTATTAATATCGAAGAAAAGGGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
1 TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCATATTCCGATATTTTAA
*
98629 AATTAAATATTATAAAAAATTATTATTTTATTTTATTCAAATTAA
66 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
* * * * *
98674 TATTTATTAATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTCATTTTCCGATATTTTTA
1 TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCATATTCCGATATTTTAA
98739 AAT
66 AAT
98742 ATTTTTTATA
Statistics
Matches: 162, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
110 160 0.99
111 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (110 bp):
TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCATATTCCGATATTTTAA
AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
Found at i:100750 original size:28 final size:26
Alignment explanation
Indices: 100709--100760 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
100699 CATACATGCA
*
100709 TTTGTATTTGCATTTGTACATTTTTACG
1 TTTGTATTTACA-TT-TACATTTTTACG
100737 TTTGTATTTACATTTACATTTTTA
1 TTTGTATTTACATTTACATTTTTA
100761 AATTTACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 10 0.43
27 2 0.09
28 11 0.48
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (26 bp):
TTTGTATTTACATTTACATTTTTACG
Found at i:100915 original size:14 final size:14
Alignment explanation
Indices: 100877--100930 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
100867 ATTTTAAATA
*
100877 ATTTACATTTACAT
1 ATTTACATTTGCAT
*
100891 TTTTACATTTGCAT
1 ATTTACATTTGCAT
100905 ATTTACATTTGGCAT
1 ATTTACATTT-GCAT
* *
100920 CTTTGCATTTG
1 ATTTACATTTG
100931 TATTGCACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (14 bp):
ATTTACATTTGCAT
Found at i:103871 original size:2 final size:2
Alignment explanation
Indices: 103864--103905 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
103854 TATCCTTTTA
103864 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103906 CCTTTGTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104238 original size:10 final size:11
Alignment explanation
Indices: 104215--104250 Score: 56
Period size: 10 Copynumber: 3.3 Consensus size: 11
104205 GAAGAAAAAG
104215 AAACAAAAACAA
1 AAAC-AAAACAA
104227 AAACAAAA-AA
1 AAACAAAACAA
104237 AAACAAAACAA
1 AAACAAAACAA
104248 AAA
1 AAA
104251 AGAAAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.43
11 9 0.39
12 4 0.17
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAACAA
Found at i:104238 original size:16 final size:16
Alignment explanation
Indices: 104209--104251 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
104199 AAGAAAGAAG
* *
104209 AAAAAGAAACAAAAAC
1 AAAAACAAAAAAAAAC
104225 AAAAACAAAAAAAAAC
1 AAAAACAAAAAAAAAC
104241 -AAAACAAAAAA
1 AAAAACAAAAAA
104252 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAAACAAAAAAAAAC
Found at i:104251 original size:22 final size:22
Alignment explanation
Indices: 104209--104250 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
104199 AAGAAAGAAG
*
104209 AAAAAGAAACAAAAACAAAAAC
1 AAAAAAAAACAAAAACAAAAAC
104231 AAAAAAAAAC-AAAACAAAAA
1 AAAAAAAAACAAAAACAAAAA
104251 AGAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (22 bp):
AAAAAAAAACAAAAACAAAAAC
Found at i:104256 original size:22 final size:22
Alignment explanation
Indices: 104209--104265 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
104199 AAGAAAGAAG
*
104209 AAAAAGAAACAAAAACAAAAAC
1 AAAAAGAAAAAAAAACAAAAAC
* *
104231 AAAAA-AAAACAAAACAAAAAAG
1 AAAAAGAAAAAAAAAC-AAAAAC
104253 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
104266 TTGAATCAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 8 0.28
22 15 0.52
23 6 0.21
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAAAAAACAAAAAC
Found at i:106722 original size:114 final size:114
Alignment explanation
Indices: 106510--106729 Score: 352
Period size: 114 Copynumber: 1.9 Consensus size: 114
106500 CACATTCTCG
* * *
106510 TAGTAGAAATAAGGAGCCCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTC
* * *
106575 GGTATGAACCCCAAAACCAATCATTAGATTTGAAATATGAATTTGTTCA
66 GGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTGTTCA
106624 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTC
1 TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTC
* *
106689 GGTAGGAATCCCATAACCAATCATT-GAAATTGAAAGATGAA
66 GGTAGGAACCCCAAAACCAATCATTAG-AATTGAAAGATGAA
106730 CTGCATGATC
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
113 1 0.01
114 96 0.99
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (114 bp):
TAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTC
GGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTGTTCA
Found at i:107648 original size:113 final size:116
Alignment explanation
Indices: 107410--108075 Score: 855
Period size: 116 Copynumber: 5.9 Consensus size: 116
107400 GCAAATATTT
* *
107410 AAATCCATCA-TTCAATGGATCAGCATTGCCA-AGTAGAGTTCATAATGAGAAGAACTCGTCATC
1 AAATCCATCACTT-GATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAAC-CGTCATC
* * * *
107473 TGAAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTT-CTC
64 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTTGTTC
* *
107526 AAATCCATCACTTGATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAA-C-TCATCTG
1 AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAACCGTCATCTG
*
107588 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTT
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
* * * * *
107639 GAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCT
1 AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAAC-CGTCATCT
* * * * *
107703 AAAGAAGAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTC
65 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
* *
107755 AAATCCATCACTTGATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAA-C-TCATCTG
1 AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAACCGTCATCTG
* * * * *
107817 AAGAAGGAAAAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTT
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
* * * * *
107868 GAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCT
1 AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAAC-CGTCATCT
107932 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
65 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
* * *
107984 AAAACCATCACTTGATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAA-C-TCATCT-
1 AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAACCGTCATCTG
108045 --GAA-GAAGAAGAAGTTCATAATGAGAAGAACT
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
108076 CATCTGAAAG
Statistics
Matches: 480, Mismatches: 57, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
109 28 0.06
110 3 0.01
112 8 0.02
113 192 0.40
114 3 0.01
115 2 0.00
116 238 0.50
117 6 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (116 bp):
AAATCCATCACTTGATGGATCAGCATTGCCAGAGTAAAGTTCATAATGAGAAGAACCGTCATCTG
AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTC
Found at i:107816 original size:229 final size:229
Alignment explanation
Indices: 107415--108075 Score: 1152
Period size: 229 Copynumber: 2.9 Consensus size: 229
107405 TATTTAAATC
** * *
107415 CATCATTCAATGGATCAGCATTGCCAAGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
107480 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTT-CTCAAATCCATCACTTGATGG
66 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAA-CTTTTTGCTCAAATCCATCACTTGATGG
107544 ATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
130 ATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
*
107609 AATGAGAAGAACTTGTTCAACTTTTTGTTTGAATT
195 AATGAGAAGAACTTGTTCAACCTTTTGTTTGAATT
*
107644 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTAAAGAA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
107709 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCAAATCCATCACTTGATGGA
66 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCAAATCCATCACTTGATGGA
* *
107774 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAAAAAAAGTTCATA
131 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
*
107839 ATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
196 ATGAGAAGAACTTGTTCAACCTTTTGTTTGAATT
107873 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
* * * * *
107938 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTCAAAACCATCACTTGATGGA
66 GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCAAATCCATCACTTGATGGA
108003 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---GAA-GAAGAAGAAGTTCATA
131 TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
108064 ATGAGAAGAACT
196 ATGAGAAGAACT
108076 CATCTGAAAG
Statistics
Matches: 413, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
225 25 0.06
226 3 0.01
228 6 0.01
229 379 0.92
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (229 bp):
CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
GAAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCAAATCCATCACTTGATGGA
TCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTTTGTTTGAATT
Found at i:108066 original size:36 final size:36
Alignment explanation
Indices: 108019--108287 Score: 228
Period size: 36 Copynumber: 7.5 Consensus size: 36
108009 TTTCCAGAGA
108019 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
108055 AAGTTCATAATGAGAAGAACTCATCTG-A-AAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
* * ** * *** ***
108089 AAATTCATAATGAGAAGAATTTGT-TCAACCTTTTGTTC
1 AAGTTCATAATGAGAAGAACTCATCTGAA---GAAGAAG
* * * * *****
108127 AAATCCATCACTG-GATAG-A-TCAGCTTTTCCAG-AG
1 AAGTTCAT-AATGAGA-AGAACTCATCTGAAGAAGAAG
*
108161 AAAGTTCATAATGAGAAGAACTTATCTGAAGAAGAAG
1 -AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
108198 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
108234 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
* *
108270 AAGTTCACAATGAAAAGA
1 AAGTTCATAATGAGAAGA
108288 GCTTGTTCAA
Statistics
Matches: 184, Mismatches: 36, Indels: 26
0.75 0.15 0.11
Matches are distributed among these distances:
33 1 0.01
34 32 0.17
35 11 0.06
36 120 0.65
37 3 0.02
38 12 0.07
39 5 0.03
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (36 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
Found at i:108101 original size:143 final size:145
Alignment explanation
Indices: 107904--108254 Score: 562
Period size: 143 Copynumber: 2.4 Consensus size: 145
107894 TGCCAGGTAG
107904 AGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
1 AGTTCATAATGAGAAGAA--C-TCATCT---GAA-GAAGAAGAAGTTCATAATGAGAAGAACTTG
* * *
107969 TTCAACTTTTTGTTCAAAACCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGA
59 TTCAACCTTTTGTTCAAAACCATCACTGGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGA
108034 AGAACTCATCTGAAGAAGAAGA
124 AGAACTCATCTGAAGAAGAAGA
* *
108056 AGTTCATAATGAGAAGAACTCATCTG-A-AAGAAGAAATTCATAATGAGAAGAATTTGTTCAACC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACC
* *
108119 TTTTGTTCAAATCCATCACTGGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTT
66 TTTTGTTCAAAACCATCACTGGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTC
108184 ATCTGAAGAAGAAGA
131 ATCTGAAGAAGAAGA
108199 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACT
108255 CATCTGAAGA
Statistics
Matches: 188, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
143 135 0.72
144 1 0.01
145 26 0.14
146 1 0.01
149 6 0.03
150 1 0.01
152 18 0.10
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.26
Consensus pattern (145 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACC
TTTTGTTCAAAACCATCACTGGATAGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTC
ATCTGAAGAAGAAGA
Found at i:108215 original size:20 final size:20
Alignment explanation
Indices: 108190--108252 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
108180 ACTTATCTGA
108190 AGAAGAAGAAGTTCATAAT-
1 AGAAGAAGAAGTTCATAATG
* *
108209 -G-AGAAGAA-CTCAT-CTG
1 AGAAGAAGAAGTTCATAATG
108225 AAGAAGAAGAAGTTCATAATG
1 -AGAAGAAGAAGTTCATAATG
108246 AGAAGAA
1 AGAAGAA
108253 CTCATCTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
15 1 0.03
16 4 0.12
17 7 0.21
18 2 0.06
19 7 0.21
20 11 0.32
21 2 0.06
ACGTcount: A:0.51, C:0.08, G:0.24, T:0.17
Consensus pattern (20 bp):
AGAAGAAGAAGTTCATAATG
Found at i:108231 original size:179 final size:187
Alignment explanation
Indices: 108019--108411 Score: 534
Period size: 179 Copynumber: 2.1 Consensus size: 187
108009 TTTCCAGAGA
108019 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCATCTG-A
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAA
* * * *
108083 -AAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGT-TCAAATCCATCAC-TG-GATA
66 GAAGAAGAAATTCACAATGAAAAGAACTTGTTCAACCTTTTGTAT-AAATCCATCACAAGAGATA
*
108144 GATCAGC-T-TTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCT-GAAG-AAGAAG
130 GATCAGCATCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAGAAGAAAGAAG
108198 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAA
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAA
* * * *
108263 GAAGAAGAAGTTCACAATGAAAAGAGCTTGTTCAACCTTTTGTATAATTCTATCACAGAAGCAGA
66 GAAGAAGAAATTCACAATGAAAAGAACTTGTTCAACCTTTTGTATAAATCCATCAC--AAG-AGA
*
108328 TAGATTAGCATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAA
128 TAGATCAGCAT----CTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT--AGAAGAAAGAA
108393 G
187 G
*
108394 AAGTTCATAATAAGAAGA
1 AAGTTCATAATGAGAAGA
108412 GCTTATTCAA
Statistics
Matches: 185, Mismatches: 11, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
179 63 0.34
180 1 0.01
181 46 0.25
182 1 0.01
184 1 0.01
186 10 0.05
187 1 0.01
192 35 0.19
195 4 0.02
196 23 0.12
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.24
Consensus pattern (187 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAA
GAAGAAGAAATTCACAATGAAAAGAACTTGTTCAACCTTTTGTATAAATCCATCACAAGAGATAG
ATCAGCATCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTAGAAGAAAGAAG
Found at i:108464 original size:124 final size:122
Alignment explanation
Indices: 108234--108516 Score: 364
Period size: 124 Copynumber: 2.3 Consensus size: 122
108224 GAAGAAGAAG
*
108234 AAGTTCATAATGAGAAGAACTCATCT---GAAG-AAGAAGAAGTTCACAATGAAAAGAGCTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAAAAGAGCTTATT
* * * * *
108295 CAACCTTTTGTATAATTCTATCACAGAAGCAGATAGATTAGCATCAACCTTTCCAG-AGA
66 CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATCAACC---CCAGCAGA
*
108354 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAAT-AAGAAGAGCTTAT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAA-AAGAGCTTAT
* * * * *
108418 TCAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAACATCATCCCCAGCGGA
65 TCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATCAACCCCAGCAGA
*
108476 AAGTTCATAATGAGAAGAACTCATCTGAAGAA-AGAGAAGAA
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAA
108517 TTTATTCAAC
Statistics
Matches: 144, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
120 26 0.18
121 12 0.08
122 34 0.24
123 6 0.04
124 66 0.46
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (122 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCACAATGAAAAGAGCTTATT
CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGATCAACATCAACCCCAGCAGA
Found at i:108658 original size:3 final size:3
Alignment explanation
Indices: 108652--108754 Score: 109
Period size: 3 Copynumber: 33.7 Consensus size: 3
108642 TTCATTTAAA
* * *
108652 TAT TAT T-T ATAT TAT TAT TAT TAT AAT TAC AAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
108697 AAT TAT AAT TAT TAT TAT TAT TAT TAT TATT TAT TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
*
108743 TAAA TAT TAT TA
1 T-AT TAT TAT TA
108755 CAAGCCCAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
2 1 0.01
3 75 0.91
4 6 0.07
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:110155 original size:2 final size:2
Alignment explanation
Indices: 110148--110176 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
110138 GTAGTCATAA
110148 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
110177 ATAATAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:110394 original size:110 final size:110
Alignment explanation
Indices: 110214--110467 Score: 447
Period size: 110 Copynumber: 2.3 Consensus size: 110
110204 TTTTAATATT
* *
110214 TATTT-TTCAATATCGAAGAAAAGGGCACTCTTAATACAACTGGATGTCCTATTCTGGTATTTTA
1 TATTTATT-AATATCGAAGAAAAGAGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTA
110278 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
65 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
110324 TATTTATTAATATCGAAGAAAAGAGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
1 TATTTATTAATATCGAAGAAAAGAGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
110389 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
66 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
* **
110434 TATTTATTAATATCAAAGAAAAGAGTTGTCTTAA
1 TATTTATTAATATCGAAGAAAAGAGCAGTCTTAA
110468 GGCACCTAGA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
110 136 0.99
111 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (110 bp):
TATTTATTAATATCGAAGAAAAGAGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
Found at i:110483 original size:110 final size:110
Alignment explanation
Indices: 110214--110501 Score: 407
Period size: 110 Copynumber: 2.6 Consensus size: 110
110204 TTTTAATATT
* * * * * *
110214 TATTT-TTCAATATCGAAGAAAAGGGCACTCTTAATACAACTGGATGTCCTATTCTGGTATTTTA
1 TATTTATT-AATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCCTATTCTGGTATTTTA
110278 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
65 AAATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
* * * *
110324 TATTTATTAATATCGAAGAAAAGAGCAGTCTTAATACAACTGGATGTCCTATTCTGGTATTTTAA
1 TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCCTATTCTGGTATTTTAA
110389 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
66 AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
** * * * * *
110434 TATTTATTAATATCAAAGAAAAGAGTTGTCTTAAGGCACCTAGAAGTCCTTTTCTGATATTTTTA
1 TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCCTATTCTGGTATTTTAA
110499 AAT
66 AAT
110502 ATTTTTTATA
Statistics
Matches: 164, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
110 162 0.99
111 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (110 bp):
TATTTATTAATATCAAAGAAAAGAGCAGTCTTAAGACAACTAGAAGTCCTATTCTGGTATTTTAA
AATTAAATATTATAAAAAATTATTATTTAATTTTATTCAAATTAA
Found at i:113617 original size:181 final size:181
Alignment explanation
Indices: 113313--113676 Score: 728
Period size: 181 Copynumber: 2.0 Consensus size: 181
113303 GTGCTTCGGC
113313 ACATACCTTGTGAAGGTAAAACCCACAGTCCTATGCACAGCCAAAACATGGAGCAGGCATATTCT
1 ACATACCTTGTGAAGGTAAAACCCACAGTCCTATGCACAGCCAAAACATGGAGCAGGCATATTCT
113378 CCCCACACCTGGAGCACTCAGCTAGTATAGAGAAAAGTCCAACTGGTGGGTCTGAAGCTGGTGAC
66 CCCCACACCTGGAGCACTCAGCTAGTATAGAGAAAAGTCCAACTGGTGGGTCTGAAGCTGGTGAC
113443 CATAATTATATCTATTTATTGCTAGAATATATAATTGCACAAATATTTTGT
131 CATAATTATATCTATTTATTGCTAGAATATATAATTGCACAAATATTTTGT
113494 ACATACCTTGTGAAGGTAAAACCCACAGTCCTATGCACAGCCAAAACATGGAGCAGGCATATTCT
1 ACATACCTTGTGAAGGTAAAACCCACAGTCCTATGCACAGCCAAAACATGGAGCAGGCATATTCT
113559 CCCCACACCTGGAGCACTCAGCTAGTATAGAGAAAAGTCCAACTGGTGGGTCTGAAGCTGGTGAC
66 CCCCACACCTGGAGCACTCAGCTAGTATAGAGAAAAGTCCAACTGGTGGGTCTGAAGCTGGTGAC
113624 CATAATTATATCTATTTATTGCTAGAATATATAATTGCACAAATATTTTGT
131 CATAATTATATCTATTTATTGCTAGAATATATAATTGCACAAATATTTTGT
113675 AC
1 AC
113677 CACTTTCGTC
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
181 183 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (181 bp):
ACATACCTTGTGAAGGTAAAACCCACAGTCCTATGCACAGCCAAAACATGGAGCAGGCATATTCT
CCCCACACCTGGAGCACTCAGCTAGTATAGAGAAAAGTCCAACTGGTGGGTCTGAAGCTGGTGAC
CATAATTATATCTATTTATTGCTAGAATATATAATTGCACAAATATTTTGT
Found at i:116563 original size:30 final size:30
Alignment explanation
Indices: 116523--116589 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
116513 GGGCTGACAA
* *
116523 TGAACAGGCTGAAAACCGATAAAACCGGGG
1 TGAACCGGCTGAAAACCGACAAAACCGGGG
* **
116553 TGAACCGGCTGAAAACCGGCAAAACCGGTT
1 TGAACCGGCTGAAAACCGACAAAACCGGGG
116583 TGAACCG
1 TGAACCG
116590 CCGGTTCACT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.36, C:0.24, G:0.28, T:0.12
Consensus pattern (30 bp):
TGAACCGGCTGAAAACCGACAAAACCGGGG
Found at i:118479 original size:20 final size:20
Alignment explanation
Indices: 118454--118495 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
118444 TTTGTTTATG
*
118454 GTTGTTCATCTTGTAA-GTTT
1 GTTGTTCATATTG-AATGTTT
118474 GTTGTTCATATTGAATGTTT
1 GTTGTTCATATTGAATGTTT
118494 GT
1 GT
118496 CATCAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.17, C:0.07, G:0.21, T:0.55
Consensus pattern (20 bp):
GTTGTTCATATTGAATGTTT
Found at i:125113 original size:37 final size:37
Alignment explanation
Indices: 125063--125147 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
125053 AAGTAAAAAT
*
125063 AAATTGTATTTATCCTCAATGATTTATTACTTACAAC
1 AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
125100 AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
1 AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
125137 AAATTGTATTT
1 AAATTGTATTT
125148 TTTATTATAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (37 bp):
AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
Found at i:126113 original size:16 final size:16
Alignment explanation
Indices: 126087--126139 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
126077 TTTTATAACT
126087 ATAAA-AAAATAATAA
1 ATAAATAAAATAATAA
*
126102 ATAAATAAAATATTAA
1 ATAAATAAAATAATAA
*
126118 A-ATAATTAAATAATTAA
1 ATA-AATAAAATAA-TAA
126135 ATAAA
1 ATAAA
126140 ATACTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 6 0.19
16 18 0.58
17 6 0.19
18 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAATAAAATAATAA
Found at i:126215 original size:10 final size:10
Alignment explanation
Indices: 126177--126206 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
126167 AATATACCTT
126177 AAGTTGAGAG
1 AAGTTGAGAG
126187 AAGTTGAGAG
1 AAGTTGAGAG
126197 AAGTTGAGAG
1 AAGTTGAGAG
126207 GATTTGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (10 bp):
AAGTTGAGAG
Found at i:127058 original size:19 final size:19
Alignment explanation
Indices: 127034--127070 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
127024 AGAGACTCAA
127034 CAAAATAAT-ATTTTATAAT
1 CAAAAT-ATCATTTTATAAT
127053 CAAAATATCATTTTATAA
1 CAAAATATCATTTTATAA
127071 CTTTTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (19 bp):
CAAAATATCATTTTATAAT
Found at i:127065 original size:60 final size:60
Alignment explanation
Indices: 126999--127112 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
126989 TAATTAGGTG
* * * *
126999 ATCATTTTATAAC-TTTTAATAGTCGAGAGACTCAACAAAATAATATTTTATAATCAAAAT
1 ATCATTTTATAACTTTTTAATAAT-GAGAGACTAAACAAAACAATATCTTATAATCAAAAT
* *
127059 ATCATTTTATAACTTTTTAATAATTAGAGGCTAAACAAAACAATATCTTATAAT
1 ATCATTTTATAACTTTTTAATAATGAGAGACTAAACAAAACAATATCTTATAAT
127113 ATGAAATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
60 38 0.81
61 9 0.19
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (60 bp):
ATCATTTTATAACTTTTTAATAATGAGAGACTAAACAAAACAATATCTTATAATCAAAAT
Found at i:127335 original size:15 final size:15
Alignment explanation
Indices: 127315--127353 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
127305 GCACTGTTTT
*
127315 ACTGAATCAGTCAGC
1 ACTGAATCAGTCAAC
127330 ACTGAATCAGTCAAC
1 ACTGAATCAGTCAAC
*
127345 ACTAAATCA
1 ACTGAATCA
127354 TTTTAAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.21
Consensus pattern (15 bp):
ACTGAATCAGTCAAC
Found at i:130236 original size:59 final size:59
Alignment explanation
Indices: 130144--130261 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
130134 ACACACCCTG
130144 CAGACGCAACTACTCGAATCCAAAAACTCTAGGAAGATCAACACTCCCTTTAACTACTA
1 CAGACGCAACTACTCGAATCCAAAAACTCTAGGAAGATCAACACTCCCTTTAACTACTA
130203 CAGACGCAACTACTCGAATCCAAAAACTCTAGGAAGATCAACACTCCCTTTAACTACTA
1 CAGACGCAACTACTCGAATCCAAAAACTCTAGGAAGATCAACACTCCCTTTAACTACTA
130262 AGGTATACTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.39, C:0.31, G:0.10, T:0.20
Consensus pattern (59 bp):
CAGACGCAACTACTCGAATCCAAAAACTCTAGGAAGATCAACACTCCCTTTAACTACTA
Found at i:130579 original size:31 final size:30
Alignment explanation
Indices: 130539--130596 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
130529 GCTAAATTCC
130539 ATGTTTAGTATCTAAACTATCAGTTTTGAT
1 ATGTTTAGTATCTAAACTATCAGTTTTGAT
* *
130569 ATGTTGTAGTATCTAAATTTTCAGTTTT
1 ATGTT-TAGTATCTAAACTATCAGTTTT
130597 TTCAAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.50
Consensus pattern (30 bp):
ATGTTTAGTATCTAAACTATCAGTTTTGAT
Found at i:131895 original size:29 final size:28
Alignment explanation
Indices: 131863--131920 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
131853 TTAGGCGATG
*
131863 TATCATTTATA-CTATTAAAATTTTAATTT
1 TATCAATTATAGC-ATT-AAATTTTAATTT
*
131892 TATCAATTATAGCATTTAATTTTAATTT
1 TATCAATTATAGCATTAAATTTTAATTT
131920 T
1 T
131921 CGTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 12 0.46
29 13 0.50
30 1 0.04
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (28 bp):
TATCAATTATAGCATTAAATTTTAATTT
Found at i:132575 original size:28 final size:28
Alignment explanation
Indices: 132535--132599 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
132525 TTGAATGAAG
132535 AGCAGCTGATGAGCTATCCAAGTGGAGT
1 AGCAGCTGATGAGCTATCCAAGTGGAGT
132563 AGCAGCTGATGAGCTATCCAAGTGGAGT
1 AGCAGCTGATGAGCTATCCAAGTGGAGT
132591 AGCAGCTGA
1 AGCAGCTGA
132600 CTGCTCAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.20
Consensus pattern (28 bp):
AGCAGCTGATGAGCTATCCAAGTGGAGT
Found at i:134962 original size:21 final size:23
Alignment explanation
Indices: 134938--134988 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
134928 AAAAATGTGC
134938 CATAAAGACAGAA-AAG-CGTGT
1 CATAAAGACAGAAGAAGACGTGT
* **
134959 CATAAAGGCTTAAGAAGACGTGT
1 CATAAAGACAGAAGAAGACGTGT
134982 CATAAAG
1 CATAAAG
134989 GCAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.40
22 3 0.12
23 12 0.48
ACGTcount: A:0.45, C:0.14, G:0.24, T:0.18
Consensus pattern (23 bp):
CATAAAGACAGAAGAAGACGTGT
Found at i:141940 original size:20 final size:20
Alignment explanation
Indices: 141915--141956 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
141905 TTTGTTTATG
*
141915 GTTGTTCATCTTGTAA-GTTT
1 GTTGTTCATATTG-AATGTTT
141935 GTTGTTCATATTGAATGTTT
1 GTTGTTCATATTGAATGTTT
141955 GT
1 GT
141957 CATCAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.17, C:0.07, G:0.21, T:0.55
Consensus pattern (20 bp):
GTTGTTCATATTGAATGTTT
Found at i:143848 original size:12 final size:12
Alignment explanation
Indices: 143831--143856 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
143821 AATAACATAC
143831 TTAAAGTTAGCT
1 TTAAAGTTAGCT
143843 TTAAAGTTAGCT
1 TTAAAGTTAGCT
143855 TT
1 TT
143857 GGACATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (12 bp):
TTAAAGTTAGCT
Found at i:145609 original size:6 final size:6
Alignment explanation
Indices: 145598--145630 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
145588 TCTCGTCTCG
145598 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
145631 AATACGTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:149350 original size:37 final size:37
Alignment explanation
Indices: 149300--149384 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
149290 AAGTAAAAAT
*
149300 AAATTGTATTTATCCTCAATGATTTATTACTTACAAC
1 AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
*
149337 AAATTGTATTTATCCTCGATGAATTATTACTTACAAC
1 AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
149374 AAATTGTATTT
1 AAATTGTATTT
149385 TTTTTATTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (37 bp):
AAATTGTATTTATCCTCAATGAATTATTACTTACAAC
Found at i:149999 original size:21 final size:22
Alignment explanation
Indices: 149973--150028 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 22
149963 ATGGAATGTG
149973 TTAAATAAAATA-T-TAAAATAA
1 TTAAATAAAATACTATAAAAT-A
149994 TTAAATAAAATACTAATAAAATA
1 TTAAATAAAATACT-ATAAAATA
*
150017 TTAAATATAATA
1 TTAAATAAAATA
150029 AAATATACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 12 0.39
22 1 0.03
23 12 0.39
24 6 0.19
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
TTAAATAAAATACTATAAAATA
Found at i:150028 original size:12 final size:12
Alignment explanation
Indices: 149973--150028 Score: 57
Period size: 11 Copynumber: 5.0 Consensus size: 12
149963 ATGGAATGTG
149973 TTAAATAAAATA
1 TTAAATAAAATA
*
149985 TT-AA-AATA-A
1 TTAAATAAAATA
149994 TTAAATAAAATA
1 TTAAATAAAATA
*
150006 CT-AATAAAATA
1 TTAAATAAAATA
*
150017 TTAAATATAATA
1 TTAAATAAAATA
150029 AAATATACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
9 3 0.09
10 5 0.14
11 15 0.43
12 12 0.34
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (12 bp):
TTAAATAAAATA
Found at i:150367 original size:14 final size:15
Alignment explanation
Indices: 150348--150376 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
150338 TCAGCGTAAA
150348 GCGCG-CTTCAGGGG
1 GCGCGCCTTCAGGGG
150362 GCGCGCCTTCAGGGG
1 GCGCGCCTTCAGGGG
150377 TCTGAGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.07, C:0.31, G:0.48, T:0.14
Consensus pattern (15 bp):
GCGCGCCTTCAGGGG
Found at i:151363 original size:9 final size:9
Alignment explanation
Indices: 151349--151375 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
151339 GGTGCATGTG
151349 AGGTTGATA
1 AGGTTGATA
151358 AGGTTGATA
1 AGGTTGATA
151367 AGGTTGATA
1 AGGTTGATA
151376 GAGCTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (9 bp):
AGGTTGATA
Found at i:154094 original size:20 final size:20
Alignment explanation
Indices: 154069--154110 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
154059 TTTGTTTATG
*
154069 GTTGTTCATCTTGTAA-GTTT
1 GTTGTTCATATTG-AATGTTT
154089 GTTGTTCATATTGAATGTTT
1 GTTGTTCATATTGAATGTTT
154109 GT
1 GT
154111 CACCAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.17, C:0.07, G:0.21, T:0.55
Consensus pattern (20 bp):
GTTGTTCATATTGAATGTTT
Found at i:161108 original size:20 final size:20
Alignment explanation
Indices: 161083--161124 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
161073 TTTGTTTATG
*
161083 GTTGTTCATCTTGTAA-GTTT
1 GTTGTTCATATTG-AATGTTT
161103 GTTGTTCATATTGAATGTTT
1 GTTGTTCATATTGAATGTTT
161123 GT
1 GT
161125 CATCAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.17, C:0.07, G:0.21, T:0.55
Consensus pattern (20 bp):
GTTGTTCATATTGAATGTTT
Found at i:166649 original size:18 final size:18
Alignment explanation
Indices: 166626--166660 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
166616 TTCCATCCGG
*
166626 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
166644 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
166661 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:171824 original size:18 final size:18
Alignment explanation
Indices: 171801--171835 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
171791 TTCTATCCGG
*
171801 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
171819 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
171836 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:174651 original size:28 final size:28
Alignment explanation
Indices: 174611--174673 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
174601 TTGAATGAAG
174611 AGCAGCTGATGAGCTATCCAAGTGGAGT
1 AGCAGCTGATGAGCTATCCAAGTGGAGT
174639 AGCAGCTGATGAGCTATCCAAGTGGAGT
1 AGCAGCTGATGAGCTATCCAAGTGGAGT
174667 AGCAGCT
1 AGCAGCT
174674 AACTGCTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.21
Consensus pattern (28 bp):
AGCAGCTGATGAGCTATCCAAGTGGAGT
Done.