genome.fa.s2614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002614.1 Hibiscus syriacus cultivar Beakdansim tig00005292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127428

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--23917	7	3502.3	7	90	7	36934	42	43	12	1	1.51
12286--12325	9	4.1	9	82	17	53	52	37	10	0	1.35
23008--31796	7	1283.7	7	92	6	14220	29	43	13	13	1.82
31375--31409	9	4.1	9	85	14	56	22	54	11	11	1.68
31713--32069	7	53.1	7	91	7	476	17	57	24	0	1.42
34120--34169	12	4.2	12	82	5	57	50	0	0	50	1.00
34102--34159	23	2.4	23	82	5	71	50	1	0	48	1.11
40968--41043	20	3.9	19	72	6	62	34	27	15	22	1.95
41104--41209	20	5.3	20	73	6	90	40	18	17	22	1.91
41114--41209	40	2.4	40	89	0	147	39	19	16	23	1.92
41301--41343	20	2.2	20	86	0	59	23	18	13	44	1.86
45273--45327	16	3.4	16	67	18	51	14	7	9	69	1.36
46846--46891	19	2.5	19	92	3	76	19	0	13	67	1.23
49086--49174	45	1.9	47	88	4	137	30	11	21	37	1.88
58686--58748	15	4.1	15	78	12	56	76	0	12	11	1.03
58746--58776	14	2.2	14	94	0	53	80	3	12	3	0.95
58686--58777	15	6.3	15	71	16	52	77	1	13	8	1.05
58801--58923	45	2.7	45	90	5	194	40	17	27	13	1.88
60172--60469	55	5.4	55	87	2	334	26	17	25	30	1.97
60198--60501	165	1.8	165	82	5	391	27	17	26	28	1.98
60220--60512	55	5.3	55	79	10	235	27	17	24	29	1.98
60275--60512	110	2.2	110	81	3	273	28	18	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61732--61776	18	2.5	18	96	0	81	20	0	13	66	1.24
64031--64142	45	2.4	45	82	7	116	33	11	21	33	1.89
67200--67237	12	3.1	12	92	3	58	73	0	5	21	1.02
66813--67417	310	2.0	306	86	4	851	40	13	9	36	1.76
67751--67903	83	1.8	83	90	2	245	45	7	2	44	1.46
71236--71399	56	3.0	55	80	5	195	18	10	29	41	1.83
74750--74808	22	2.6	22	83	2	82	27	11	22	38	1.89
84421--84487	21	3.4	21	67	25	65	44	17	4	32	1.69
88571--88601	10	3.1	10	100	0	62	51	0	19	29	1.47
93230--93609	137	2.8	137	92	4	634	38	18	14	28	1.90
94697--94788	29	3.1	29	68	20	82	29	14	16	40	1.87
100650--100684	18	1.9	18	88	0	52	28	17	0	54	1.43
101981--102039	8	7.6	8	71	21	54	18	23	42	15	1.88
101974--102020	15	3.3	15	88	5	62	21	23	38	17	1.93
101981--102087	13	7.3	13	74	21	79	16	22	44	15	1.86
101996--102091	31	3.1	31	93	0	174	14	20	47	16	1.82
102002--102074	18	4.3	18	76	16	93	13	21	47	16	1.81
105865--105899	18	1.9	18	88	0	52	28	17	0	54	1.43
107182--107228	15	3.3	15	88	5	62	21	23	38	17	1.93
107189--107290	13	7.3	13	81	12	114	17	22	44	15	1.87
107210--107294	18	4.6	18	73	23	86	14	21	48	16	1.81
107204--107294	31	3.1	31	78	15	129	15	20	47	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122105--122179	31	2.4	31	88	0	105	28	10	14	46	1.78
122570--122679	39	2.8	39	78	17	129	35	14	4	45	1.65
122842--122875	16	2.0	18	88	11	54	64	2	0	32	1.08
122927--122985	21	2.6	22	82	15	75	40	6	1	50	1.39
122931--122999	25	2.6	27	76	21	74	40	5	1	52	1.34
122938--123001	25	2.5	25	80	12	76	42	4	1	51	1.32
122982--123041	25	2.3	27	82	5	79	40	1	0	58	1.08

Tables:   1

The End!