Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002617.1 Hibiscus syriacus cultivar Beakdansim tig00005299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60787

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
467--539
29
2.5
30
76
10
78
45
6
16
31
1.74
3752--3810
20
2.9
22
82
9
63
45
8
0
45
1.33
16359--16420
30
2.1
30
93
0
106
35
19
16
29
1.93
18114--18164
25
2.1
25
81
3
59
43
5
17
33
1.73
18523--18548
7
3.7
7
100
0
52
30
0
0
69
0.89
22069--22107
19
2.0
20
90
5
62
48
7
15
28
1.72
22624--22678
20
2.7
20
82
5
65
54
0
1
43
1.10
23000--23060
24
2.6
24
84
7
72
4
26
19
49
1.69
23020--23067
24
2.0
24
100
0
96
4
20
20
54
1.61
24362--24504
22
6.4
22
65
15
62
44
1
4
48
1.32
24379--24509
24
5.6
24
67
13
94
45
1
5
47
1.34
24388--24422
15
2.4
15
85
4
54
45
0
2
51
1.16
24509--24567
23
2.5
23
78
13
66
45
1
10
42
1.48
24583--24618
3
12.0
3
100
0
72
33
0
0
66
0.92
25355--25888
201
2.7
201
86
3
686
35
16
19
27
1.94
26741--26796
27
2.0
29
83
13
73
33
0
7
58
1.25
26759--26804
22
2.2
20
84
7
56
36
0
4
58
1.18
26771--26819
24
2.1
23
84
3
62
36
2
2
59
1.21
26810--26843
15
2.3
15
90
10
52
47
0
2
50
1.16
26997--27046
24
2.1
24
96
0
91
18
0
14
68
1.22
26995--27049
27
2.0
27
100
0
110
18
0
14
67
1.24
27000--27043
21
2.1
21
91
0
70
18
0
13
68
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27006--27049
3
14.7
3
95
0
52
22
0
9
68
1.18
27826--27851
2
13.0
2
100
0
52
50
0
0
50
1.00
28722--28803
32
2.6
32
92
0
128
12
10
35
41
1.78
29036--29103
22
3.3
22
66
26
67
5
22
38
33
1.78
29020--29108
39
2.3
39
98
0
169
4
21
42
31
1.73
29449--29485
18
2.1
18
94
0
65
29
24
5
40
1.77
32996--33031
5
7.2
5
87
0
54
77
5
0
16
0.94
33357--33429
30
2.4
30
81
4
85
64
4
9
21
1.40
34211--34246
18
2.1
16
90
10
54
2
19
0
77
0.88
35053--35533
133
3.6
132
82
4
551
24
17
32
24
1.97
35053--35533
263
1.8
263
85
4
675
24
17
32
24
1.97
35606--35742
37
3.7
37
85
8
174
34
13
17
35
1.88
36005--36065
32
1.9
32
89
0
95
29
32
13
24
1.93
48814--48865
26
2.0
26
100
0
104
57
7
11
23
1.59
49755--49819
32
2.0
32
87
0
94
66
3
10
20
1.36
51233--51293
3
20.7
3
90
9
99
65
0
0
34
0.93
53236--53278
21
2.0
21
81
0
50
32
0
11
55
1.36
53703--53737
18
1.9
18
88
0
52
31
2
17
48
1.61
55808--55849
21
2.0
21
85
0
57
40
2
0
57
1.12
55829--55874
11
4.0
12
77
5
51
34
2
0
63
1.07
55853--55898
8
5.9
8
78
14
51
28
0
2
69
1.00
58312--58336
13
1.9
13
100
0
50
8
0
12
80
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58998--59048
26
2.0
26
84
7
68
19
1
19
58
1.48
59888--60280
82
4.8
83
83
3
440
27
21
17
33
1.96

Tables:   1

The End!