genome.fa.s2618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002618.1 Hibiscus syriacus cultivar Beakdansim tig00005323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113854

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3896--4187	43	6.9	42	82	3	255	22	19	23	33	1.97
3896--4187	85	3.4	84	79	4	282	22	19	23	33	1.97
4598--4690	21	4.4	21	87	4	125	0	34	21	44	1.53
4598--4718	42	2.9	42	85	2	145	0	34	22	42	1.54
4654--4718	12	5.7	12	71	20	50	0	38	21	40	1.54
4652--4721	21	3.3	21	81	0	77	0	38	21	40	1.54
4619--4723	21	5.1	20	81	3	66	0	37	20	41	1.53
8066--8269	41	5.0	42	78	4	177	31	16	15	36	1.90
8067--8226	82	2.0	81	85	3	214	31	18	14	35	1.91
20523--20557	16	2.1	17	89	5	54	34	0	22	42	1.54
24777--24801	11	2.3	11	100	0	50	36	8	0	56	1.29
26826--26872	15	3.1	15	70	11	51	27	25	25	21	1.99
26821--26892	30	2.4	30	79	4	83	33	22	30	13	1.93
27498--27530	4	8.2	4	100	0	66	48	24	0	27	1.51
29025--29049	12	2.1	12	100	0	50	36	0	40	24	1.55
29067--29096	2	15.0	2	100	0	60	50	0	0	50	1.00
29426--29467	21	2.0	21	85	0	57	45	26	0	28	1.54
31199--31232	16	2.1	16	94	0	59	44	20	20	14	1.87
42859--42892	15	2.1	17	89	10	54	64	8	0	26	1.22
43005--43128	49	2.5	49	88	0	185	40	16	20	22	1.91
43233--43304	28	2.6	28	81	0	90	37	20	26	15	1.92
46100--46171	17	4.0	16	71	28	56	40	12	9	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46101--46194	38	2.4	39	91	5	147	39	13	10	36	1.80
46178--46239	27	2.4	26	86	7	83	40	16	14	29	1.88
46721--46952	119	1.9	119	85	5	317	23	17	6	52	1.67
47135--47202	18	3.8	18	98	0	127	41	10	0	48	1.37
50251--50280	2	15.0	2	100	0	60	50	0	0	50	1.00
50314--50423	38	2.8	39	80	15	138	33	19	0	46	1.56
50465--50509	18	2.5	18	82	7	56	28	2	2	66	1.15
51225--51269	22	2.2	20	84	8	54	40	0	4	55	1.20
56599--56631	11	2.8	12	86	13	50	60	0	0	39	0.97
57834--57866	16	1.9	17	88	11	50	36	0	3	60	1.12
57829--57868	17	2.3	19	79	16	50	32	0	2	65	1.06
58112--58139	13	2.2	13	100	0	56	21	28	25	25	1.99
58957--59002	24	1.9	24	100	0	92	36	0	6	56	1.25
58960--59013	24	2.3	24	90	3	83	42	0	7	50	1.30
59633--59697	33	2.0	33	84	0	85	20	43	15	21	1.88
60105--60137	13	2.4	14	90	5	50	18	6	9	66	1.40
60158--60241	34	2.5	33	85	12	109	20	1	15	63	1.38
60158--60245	33	2.6	33	85	10	108	19	1	15	63	1.37
60240--60320	35	2.3	32	77	20	83	27	8	8	55	1.59
64320--64514	97	2.0	97	100	0	390	25	16	32	24	1.96
65694--65734	14	2.7	16	74	14	50	26	4	0	68	1.10
65694--65781	31	2.9	31	86	1	115	23	7	2	65	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65731--65925	29	6.7	29	75	14	134	18	13	6	61	1.53
65739--65928	57	3.2	59	78	10	176	20	14	6	58	1.57
65844--65913	15	4.8	14	79	8	59	20	12	7	60	1.56
67532--67750	93	2.4	93	88	0	312	29	12	19	38	1.88
69491--69543	22	2.2	25	77	22	76	37	18	15	28	1.91
69497--69545	22	2.2	22	100	0	98	34	22	14	28	1.93
76135--76248	3	38.7	3	93	6	198	32	0	0	67	0.91
80826--80912	43	2.0	43	100	0	174	35	25	6	32	1.82
83029--83088	30	2.0	30	86	0	84	21	18	16	43	1.88
87443--87489	21	2.2	21	85	7	60	21	17	36	25	1.94
93826--93889	21	3.0	21	81	4	65	23	35	25	15	1.94
93828--93908	21	3.8	21	74	18	60	23	37	24	14	1.93
98549--98616	32	2.1	34	86	10	97	51	1	2	44	1.25
98536--98616	18	4.8	18	70	21	50	54	1	2	41	1.21
98610--98654	19	2.4	19	88	0	72	42	8	0	48	1.34
98627--98684	30	1.9	30	89	6	91	39	12	0	48	1.40
103969--104011	18	2.4	18	88	0	59	18	37	37	6	1.78

Tables:   1

The End!