genome.fa.s262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000262.1 Hibiscus syriacus cultivar Beakdansim tig00000484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63872

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343--381	12	3.2	12	85	3	51	41	7	10	41	1.68
349--394	24	1.9	24	82	8	58	45	8	6	39	1.61
490--529	19	2.1	19	90	0	62	35	5	5	55	1.44
1772--1817	2	23.0	2	100	0	92	50	0	0	50	1.00
7597--7626	6	5.0	6	100	0	60	50	0	0	50	1.00
8003--8047	18	2.5	18	100	0	90	26	20	33	20	1.97
8519--8644	47	2.8	45	86	9	168	30	19	7	41	1.80
8519--8660	47	3.3	42	77	19	141	30	20	7	41	1.79
8725--8808	40	2.1	40	84	0	105	26	23	23	26	2.00
20957--21064	43	2.5	43	88	5	148	50	7	23	19	1.73
20957--21115	43	3.8	41	79	11	137	49	10	23	16	1.77
22661--22732	22	3.0	24	86	10	94	47	0	5	47	1.25
22795--22831	16	2.3	16	90	9	58	43	2	8	45	1.47
22864--22944	5	16.0	5	77	19	71	16	4	1	77	1.00
22863--22939	11	7.0	11	77	16	79	15	5	0	79	0.91
23390--23428	19	2.1	19	90	0	60	58	15	20	5	1.55
25868--25942	35	2.1	35	92	0	123	33	29	28	9	1.88
26024--26070	23	2.0	23	91	0	76	40	21	12	25	1.89
26027--26076	23	2.2	23	85	0	64	38	22	16	24	1.93
28574--28612	7	5.3	7	88	11	60	25	25	35	12	1.92
28555--28628	8	9.5	8	83	16	86	22	24	36	16	1.94
28565--28612	15	3.1	15	96	3	87	25	25	35	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28602--28677	13	5.5	13	79	14	80	15	21	46	17	1.84
28596--28650	18	2.9	18	89	8	74	14	21	45	18	1.85
28602--28663	31	2.0	31	93	0	106	14	20	46	17	1.83
30655--30729	35	2.1	35	92	0	123	33	29	28	9	1.88
30811--30857	23	2.0	23	91	0	76	40	21	12	25	1.89
30814--30863	23	2.2	23	85	0	64	38	22	16	24	1.93
33345--33406	7	7.6	9	89	10	50	24	24	33	17	1.96
33366--33403	7	5.3	7	93	6	67	26	26	34	13	1.93
33393--33468	13	5.5	13	79	14	80	15	21	46	17	1.84
33365--33437	21	3.6	21	80	14	75	19	24	39	16	1.91
33387--33441	18	2.9	18	89	8	74	14	21	45	18	1.85
33393--33454	31	2.0	31	93	0	106	14	20	46	17	1.83
35447--35521	35	2.1	35	92	0	123	33	29	28	9	1.88
35603--35649	23	2.0	23	91	0	76	40	21	12	25	1.89
35606--35655	23	2.2	23	85	0	64	38	22	16	24	1.93
38156--38194	7	5.3	7	88	11	60	25	25	35	12	1.92
38155--38194	15	2.7	15	100	0	80	25	25	37	12	1.91
38136--38210	8	9.5	8	79	19	79	22	24	37	16	1.93
38184--38259	13	5.5	13	79	14	80	15	21	46	17	1.84
38178--38232	18	2.9	18	89	8	74	14	21	45	18	1.85
38184--38245	31	2.0	31	93	0	106	14	20	46	17	1.83
40237--40311	35	2.1	35	92	0	123	33	29	28	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40393--40439	23	2.0	23	91	0	76	40	21	12	25	1.89
40396--40445	23	2.2	23	85	0	64	38	22	16	24	1.93
42948--42986	7	5.3	7	88	11	60	25	25	35	12	1.92
42947--42986	15	2.7	15	100	0	80	25	25	37	12	1.91
42928--43002	8	9.5	8	79	19	79	22	24	37	16	1.93
42976--43051	13	5.5	13	79	14	80	15	21	46	17	1.84
42970--43024	18	2.9	18	89	8	74	14	21	45	18	1.85
42976--43037	31	2.0	31	93	0	106	14	20	46	17	1.83
46186--46254	28	2.3	29	83	11	79	37	2	13	46	1.58
46344--46444	29	3.4	28	79	11	103	42	2	4	49	1.39
46365--46440	32	2.6	28	82	13	98	47	2	3	46	1.35
59507--59539	15	2.1	16	94	5	59	6	24	18	51	1.68
61308--61364	20	2.9	20	92	7	91	15	40	14	29	1.87
61300--61370	20	3.6	20	84	5	74	22	35	12	29	1.91

Tables:   1

The End!