genome.fa.s2620.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002620.1 Hibiscus syriacus cultivar Beakdansim tig00005328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94799

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10159--10278	41	2.9	41	88	2	116	23	20	20	35	1.96
10182--10250	20	3.4	20	73	11	77	21	18	20	39	1.93
10207--10333	42	3.0	41	87	10	170	20	18	22	37	1.94
10201--10317	21	5.6	21	72	13	107	19	19	24	35	1.95
10257--10333	21	3.6	21	73	16	68	19	19	22	38	1.93
10395--10428	6	5.7	6	100	0	68	32	50	17	0	1.47
10429--10464	5	7.4	5	96	3	65	36	22	41	0	1.54
11069--11105	19	1.9	19	88	0	56	29	27	18	24	1.98
11101--11319	21	10.5	21	79	10	209	23	20	23	32	1.97
11101--11319	83	2.6	84	84	5	286	23	20	23	32	1.97
11720--11761	22	2.0	22	85	4	59	38	11	0	50	1.40
17861--17908	17	2.9	17	90	3	71	39	10	10	39	1.74
18413--18473	23	2.7	24	78	17	67	19	8	14	57	1.62
19758--19820	23	2.7	24	82	7	76	12	19	17	50	1.77
20821--20880	22	2.7	22	84	2	75	50	11	23	15	1.76
21087--21130	2	22.0	2	95	0	79	50	2	0	47	1.13
25989--26014	2	13.0	2	100	0	52	50	0	0	50	1.00
26285--26329	21	2.1	21	83	0	54	28	11	8	51	1.68
29949--30178	42	5.5	41	76	9	203	27	15	5	52	1.64
29949--30315	42	8.8	41	70	18	160	26	16	6	50	1.70
30473--30517	20	2.2	21	92	4	74	26	26	17	28	1.98
30487--30581	40	2.4	40	89	0	136	31	26	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30511--30593	20	4.2	20	98	0	157	34	25	19	20	1.96
30523--30612	40	2.3	38	84	11	110	37	24	17	20	1.93
30482--30612	60	2.2	58	76	12	138	35	25	17	22	1.95
30771--30812	22	1.9	22	85	9	59	23	35	14	26	1.93
34094--34119	2	13.0	2	100	0	52	50	0	0	50	1.00
36226--36275	21	2.4	21	80	6	57	20	12	38	30	1.88
36618--36736	42	2.8	42	85	2	141	21	34	20	23	1.97
36622--36736	21	5.5	21	76	4	97	21	34	20	22	1.97
38086--38231	64	2.3	64	86	3	204	30	2	14	53	1.52
38303--38364	20	3.1	20	73	0	61	33	16	22	27	1.95
38576--38611	18	2.0	18	94	0	63	16	2	25	55	1.55
38820--38851	16	1.9	17	93	6	57	65	0	6	28	1.16
41735--41812	24	3.2	24	92	0	129	38	19	20	21	1.94
41735--41826	24	3.8	24	86	0	76	36	19	19	23	1.95
42707--42868	40	4.0	41	76	7	161	27	12	25	34	1.92
42705--42867	20	8.1	20	77	10	145	26	12	25	34	1.92
42851--42896	21	2.2	21	84	0	56	39	19	21	19	1.93
42931--42980	19	2.6	19	83	3	55	22	12	30	36	1.90
43498--43550	24	2.2	24	89	0	79	30	5	16	47	1.70
50671--50788	20	5.8	20	80	8	103	38	22	18	20	1.93
50735--50948	20	10.6	20	83	5	225	36	25	19	18	1.95
50735--50949	60	3.6	60	82	0	250	36	25	19	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51331--51401	33	2.2	33	92	0	115	14	19	18	47	1.82
51481--51590	21	5.8	20	74	17	108	45	18	24	11	1.83
51474--51623	33	4.1	38	85	10	149	46	19	24	10	1.80
51541--51630	14	5.7	14	69	23	63	44	24	23	7	1.79
51539--51646	33	3.3	33	97	0	198	46	25	21	7	1.77
51588--51646	19	3.4	19	68	22	65	45	28	18	6	1.75
51642--51842	19	11.6	19	71	20	163	10	20	22	46	1.81
51647--51805	33	4.8	33	95	0	282	10	21	21	47	1.80
51664--51786	14	7.7	14	69	24	57	9	21	21	46	1.80
53765--53800	14	2.6	14	95	0	63	33	0	22	44	1.53
53907--54023	19	6.4	19	85	10	172	46	16	22	15	1.84
53907--54023	33	3.2	36	82	13	150	46	16	22	15	1.84
53925--54041	53	2.2	53	96	1	218	44	17	23	14	1.85
54070--54201	19	7.4	19	79	17	167	14	20	18	46	1.83
54048--54215	33	4.9	33	84	11	239	13	22	18	45	1.84
54048--54234	67	2.7	70	90	4	283	13	21	19	45	1.85
56493--56517	12	2.1	12	100	0	50	0	28	0	72	0.86
56692--56737	24	2.0	23	87	12	67	36	21	15	26	1.93
57419--57688	20	13.5	20	86	2	274	20	18	24	37	1.94
57419--57688	40	6.8	40	87	5	307	20	18	24	37	1.94
57655--57752	21	4.8	20	75	15	83	22	16	22	38	1.92
57655--57753	42	2.4	43	78	8	107	22	16	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58374--58421	18	2.6	18	96	3	87	35	0	0	64	0.94
58374--58431	18	3.1	18	90	5	71	36	3	0	60	1.14
58459--58587	28	4.6	28	77	11	131	36	3	0	58	1.22
58507--58566	17	3.7	17	68	20	56	38	0	0	61	0.96
58675--58834	30	5.6	29	68	18	104	60	0	3	35	1.15
58675--58760	32	2.9	29	86	10	111	61	0	2	36	1.09
67901--67936	15	2.4	15	95	0	63	8	69	16	5	1.33
67890--67917	11	2.5	11	100	0	56	7	67	17	7	1.37
69686--69735	21	2.5	20	87	6	73	74	2	8	16	1.15
74175--74218	2	22.0	2	100	0	88	50	0	0	50	1.00
76846--76944	18	5.5	18	96	0	180	28	33	22	16	1.95
78608--78661	20	2.7	20	77	11	74	27	31	14	25	1.95
78691--78742	20	2.6	20	90	0	86	38	26	15	19	1.91
78730--78780	19	2.7	19	87	0	75	35	21	11	31	1.90
81956--81991	18	2.0	18	94	0	63	55	25	2	16	1.55
83901--83956	21	2.7	21	76	15	53	26	12	30	30	1.93
84755--84818	30	2.1	30	85	0	83	34	28	18	18	1.95
85494--85763	64	4.2	64	78	11	236	26	18	19	35	1.95
85489--85763	127	2.2	128	80	7	301	26	18	19	34	1.95
89683--89948	64	4.2	64	75	11	201	26	18	18	36	1.94
91035--91061	13	2.1	13	100	0	54	22	40	22	14	1.90
92837--92862	13	2.0	13	100	0	52	76	15	7	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93079--93125	22	2.1	22	88	0	67	23	10	40	25	1.87
93253--93336	20	4.2	20	87	3	125	17	16	25	40	1.90
93253--93336	39	2.1	40	95	2	152	17	16	25	40	1.90
94637--94669	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!