genome.fa.s2623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002623.1 Hibiscus syriacus cultivar Beakdansim tig00005339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105194

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5255--5395	74	1.9	74	92	2	239	26	13	22	36	1.92
10431--10493	4	15.8	4	100	0	126	74	0	25	0	0.82
16611--16651	21	2.0	21	85	0	55	29	29	24	17	1.97
18183--18306	30	4.1	30	94	2	205	20	21	25	31	1.98
23643--23668	3	8.7	3	100	0	52	65	0	0	34	0.93
25175--25680	146	3.5	146	98	0	969	29	12	9	49	1.71
27409--27572	83	2.0	83	87	2	240	45	10	5	38	1.63
31720--31882	64	2.5	64	75	7	152	31	20	20	26	1.97
32667--32884	103	2.1	103	90	0	346	26	12	22	38	1.90
32891--32968	23	3.3	23	80	1	84	24	19	23	33	1.97
44718--44812	20	4.8	20	97	0	172	27	21	9	42	1.83
45461--45511	10	5.1	10	76	7	50	76	9	13	0	1.02
46364--46420	23	2.4	23	77	8	62	36	10	5	47	1.61
47391--47528	36	3.8	36	81	7	165	34	16	13	35	1.88
47552--47625	31	2.3	32	84	9	98	36	12	10	40	1.78
48077--48199	65	1.9	64	88	1	183	28	13	12	46	1.78
49097--49285	43	4.3	43	67	16	125	24	32	20	22	1.97
49179--49255	41	1.9	40	83	2	100	19	38	19	22	1.93
49034--49417	135	2.9	134	86	4	497	25	30	17	25	1.98
49600--49629	9	3.3	9	95	0	51	33	6	0	60	1.23
50423--50465	11	3.9	11	79	11	52	4	41	2	51	1.35
56873--56934	21	3.0	20	79	11	63	64	4	0	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56887--56932	20	2.2	21	92	3	76	69	4	0	26	1.07
57463--57495	2	17.0	2	93	6	59	48	0	0	51	1.00
57540--57587	24	2.0	24	84	8	62	27	0	4	68	1.07
57743--57785	21	2.0	21	90	0	68	37	9	9	44	1.69
61439--61478	21	1.9	21	85	10	55	52	5	0	42	1.23
65084--65283	108	1.8	108	88	1	301	49	15	16	20	1.80
66245--66294	12	4.4	12	80	10	52	6	4	42	48	1.46
66275--66314	17	2.3	18	82	4	55	7	2	35	55	1.42
67547--67590	21	2.0	23	82	8	56	45	4	4	45	1.44
68637--68671	18	1.9	18	88	0	52	37	14	28	20	1.91
72446--72471	10	2.6	10	100	0	52	7	0	0	92	0.39
72490--72555	23	2.9	22	84	4	78	13	13	19	53	1.73
78623--78678	28	2.0	27	82	3	67	46	7	0	46	1.30
90382--90468	20	4.3	20	71	11	79	40	21	14	22	1.91
90402--90532	40	3.3	40	86	2	165	40	23	15	20	1.90
90426--90554	20	6.4	20	76	3	116	43	23	14	18	1.87
90426--90554	40	3.2	40	85	2	161	43	23	14	18	1.87
91063--91117	20	2.8	19	75	8	56	18	16	18	47	1.83
92814--92863	21	2.4	21	89	0	82	14	14	34	38	1.85
93234--93311	39	2.0	39	94	0	138	32	30	20	16	1.95
93310--93408	21	4.7	21	70	14	69	24	32	19	24	1.97
93366--93428	21	3.0	21	81	9	67	17	38	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94756--94929	66	2.6	65	82	12	212	29	2	15	52	1.55
95004--95052	20	2.5	20	68	0	53	34	20	20	24	1.96
95105--95150	17	2.7	17	93	0	83	52	17	4	26	1.63
95397--95432	18	2.0	18	94	0	63	16	0	25	58	1.38
97844--97877	12	2.8	12	86	0	50	17	0	23	58	1.38
98565--98655	19	4.7	19	79	6	85	30	14	23	31	1.94
98663--98702	20	2.0	20	95	0	71	27	20	17	35	1.95
98724--98772	19	2.5	19	80	3	53	30	12	22	34	1.91
98774--98807	14	2.3	15	95	5	61	52	5	8	32	1.56
102666--102715	3	17.0	3	95	4	93	66	0	0	34	0.92

Tables:   1

The End!