genome.fa.s2624.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002624.1 Hibiscus syriacus cultivar Beakdansim tig00005343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85780

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444--472	13	2.2	13	100	0	58	0	31	62	6	1.22
1021--1055	17	1.9	19	88	11	56	22	0	5	71	1.07
12357--12384	1	28.0	1	100	0	56	100	0	0	0	0.00
13345--14059	52	13.7	52	96	0	1295	24	15	23	36	1.93
14618--15400	113	6.9	113	93	0	1287	37	14	19	28	1.92
15695--15774	3	26.7	3	89	0	124	35	1	0	63	1.02
16520--16548	13	2.2	13	100	0	58	0	31	62	6	1.22
17102--17136	17	1.9	19	88	11	56	22	0	5	71	1.07
22420--22482	31	2.0	31	90	0	99	26	19	19	34	1.95
23166--23206	12	3.6	12	74	12	50	21	14	19	43	1.87
23164--23206	22	2.0	22	95	0	77	23	16	18	41	1.89
27314--27342	2	14.5	2	100	0	58	48	0	0	51	1.00
28633--28682	21	2.4	21	100	0	100	20	6	50	24	1.70
31123--31167	3	15.0	3	85	0	63	37	2	33	26	1.69
32587--33079	183	2.7	182	96	1	896	33	15	18	33	1.91
35542--35606	25	2.6	25	80	0	85	35	9	13	41	1.77
35952--36024	23	3.2	23	86	0	83	32	2	23	41	1.69
36452--36488	18	2.1	18	89	0	56	32	5	10	51	1.60
36444--36490	24	2.0	24	86	0	67	34	4	14	46	1.64
36748--36834	39	2.2	39	93	0	147	47	20	14	17	1.83
37257--37329	23	3.2	23	84	0	83	32	4	20	42	1.71
37685--37757	23	3.2	23	90	0	110	34	2	23	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38116--38188	23	3.2	23	88	0	101	34	4	21	39	1.73
37053--41951	431	11.5	431	97	1	9102	40	7	12	38	1.72
38546--38595	23	2.2	23	88	0	73	34	4	24	38	1.74
38954--39026	23	3.2	23	86	0	92	32	4	21	41	1.72
39389--39459	21	3.3	21	84	7	88	33	4	23	38	1.75
39384--39454	23	3.2	22	84	9	90	33	4	23	38	1.75
37053--41951	858	5.7	862	96	1	9111	40	7	12	38	1.72
39813--39885	23	3.2	23	92	0	110	34	4	23	38	1.74
40244--40316	23	3.2	23	88	0	101	34	4	21	39	1.73
40671--40743	23	3.2	23	88	0	101	34	4	21	39	1.73
41102--41174	23	3.2	23	84	0	92	34	4	20	41	1.72
41529--41601	23	3.2	23	86	0	101	32	5	20	41	1.75
47285--47324	16	2.4	16	87	4	53	30	10	7	52	1.62
52990--53050	23	2.7	23	86	0	86	26	26	26	21	1.99
53066--53283	103	2.1	103	96	0	409	37	22	13	27	1.91
54829--54870	21	2.0	21	85	0	57	14	19	30	35	1.91
56708--56822	30	3.8	30	77	0	104	32	13	25	29	1.93
57195--57247	27	2.0	27	96	0	97	35	16	11	35	1.85
63442--63473	2	16.0	2	100	0	64	50	0	0	50	1.00
63775--63805	3	10.3	3	92	0	53	0	38	0	61	0.96
64394--64425	3	10.7	3	100	0	64	68	0	0	31	0.90
75400--75440	22	1.9	21	90	5	64	24	0	4	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79016--79066	3	18.0	3	88	11	81	66	0	0	33	0.92
79016--79072	11	5.1	11	87	8	71	64	1	0	33	1.04
79016--79066	14	3.6	14	94	5	86	66	0	0	33	0.92
79016--79066	17	3.0	17	86	11	77	66	0	0	33	0.92
79687--79755	34	2.0	34	88	5	104	37	7	2	52	1.44
81698--81773	36	2.1	36	95	4	136	39	7	7	44	1.63
84808--84879	32	2.2	32	95	0	126	30	40	23	5	1.77
84804--84876	14	4.5	17	71	20	59	31	39	21	6	1.80

Tables:   1

The End!