genome.fa.s2625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002625.1 Hibiscus syriacus cultivar Beakdansim tig00005344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63988

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1541--1592	18	2.7	20	76	11	72	26	32	13	26	1.94
1622--1672	19	2.6	20	84	6	77	37	27	15	19	1.92
1660--1709	18	2.7	19	84	3	66	36	22	12	30	1.90
4835--4869	18	2.0	17	88	5	52	54	25	2	17	1.57
6769--6824	21	2.7	21	76	15	53	26	12	30	30	1.93
8346--8616	64	4.2	64	78	10	236	26	18	19	35	1.95
8341--8616	128	2.2	128	80	6	301	26	18	19	35	1.95
12608--12878	64	4.2	64	76	10	209	26	18	18	36	1.94
12603--12878	128	2.2	128	79	6	292	27	17	19	35	1.94
13707--13748	12	3.5	12	83	0	57	66	0	2	30	1.04
13985--14011	13	2.1	13	100	0	54	22	40	22	14	1.90
15817--15842	13	2.0	13	100	0	52	76	15	7	0	0.99
16060--16110	22	2.3	22	86	0	75	23	11	41	23	1.87
16238--16322	20	4.2	20	90	0	134	18	16	24	40	1.91
16238--16322	40	2.1	40	97	0	161	18	16	24	40	1.91
18932--18994	18	3.5	18	88	0	99	25	33	19	22	1.97
25365--25412	23	2.2	21	85	10	62	20	39	18	20	1.92
28240--28543	149	2.0	149	99	0	599	27	15	20	35	1.93
28521--28566	23	2.0	23	91	0	74	21	23	26	28	1.99
32954--33034	29	2.7	30	77	11	87	45	4	14	34	1.67
46653--46765	60	1.9	60	87	3	165	11	23	30	34	1.90
46655--46791	60	2.3	60	83	2	159	11	24	30	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47794--47856	11	5.9	11	69	14	51	57	3	1	38	1.24
47900--47968	28	2.5	28	80	4	95	46	24	0	28	1.53
54052--54154	31	3.4	31	66	15	81	47	6	16	29	1.72

Tables:   1

The End!