genome.fa.s2626.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002626.1 Hibiscus syriacus cultivar Beakdansim tig00005352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219420

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--8284	7	1195.6	7	96	2	15517	42	43	0	13	1.46
8259--8363	7	15.1	7	87	8	85	29	54	14	1	1.51
8303--8360	20	2.8	21	89	2	82	24	55	17	3	1.57
8337--8970	7	90.4	7	98	0	1198	14	43	28	13	1.84
8282--9211	7	133.3	7	93	2	713	14	48	27	9	1.75
9213--9280	7	9.9	7	79	9	77	23	45	16	14	1.84
9213--9280	13	4.9	14	80	8	77	23	45	16	14	1.84
9232--9278	22	2.2	22	92	3	78	23	48	14	12	1.78
11105--11148	23	2.0	23	82	8	56	27	18	25	29	1.98
11774--11811	20	1.9	20	88	0	58	10	31	34	23	1.89
15880--15909	4	7.5	4	100	0	60	0	73	0	26	0.84
41115--41165	25	2.1	24	85	3	66	49	0	0	50	1.00
41263--41304	21	2.0	21	100	0	84	33	23	28	14	1.94
41400--41475	38	2.0	38	100	0	152	23	26	15	34	1.95
42167--42312	55	2.7	55	94	0	256	20	10	23	45	1.83
47205--47280	32	2.4	31	82	8	100	13	19	30	36	1.90
57448--57603	86	1.8	86	88	2	244	39	21	10	27	1.87
63565--63625	31	2.0	32	90	0	81	52	6	18	22	1.68
66678--66788	23	4.7	23	75	3	89	21	23	22	32	1.98
66723--66778	24	2.3	25	76	14	64	25	26	16	32	1.96
67825--67850	12	2.2	12	100	0	52	65	0	26	7	1.20
84571--84733	74	2.2	75	93	2	283	23	25	30	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87320--87359	21	1.9	21	89	0	62	10	25	40	25	1.86
87340--87402	20	2.9	21	79	9	65	15	25	34	23	1.95
93079--93286	74	2.8	75	91	2	328	23	26	28	21	1.99
94451--94531	20	3.8	21	78	12	67	27	33	20	18	1.96
101456--101490	14	2.5	14	90	9	54	28	8	14	48	1.73
101617--101679	23	2.7	23	78	7	65	47	1	1	49	1.20
101805--101851	23	2.1	23	84	7	62	51	0	0	48	1.00
101947--102005	20	2.9	21	73	17	61	54	1	0	44	1.10
101971--102098	31	4.3	30	70	19	90	50	0	2	46	1.19
102013--102097	23	3.7	23	72	16	68	50	0	2	47	1.14
102070--102125	23	2.3	23	84	6	67	48	0	1	50	1.11
107352--107383	2	16.0	2	100	0	64	50	0	0	50	1.00
107632--107724	47	1.9	47	84	4	123	17	37	30	15	1.90
121361--121451	30	2.9	31	81	4	103	38	6	8	46	1.61
121347--121436	30	3.0	29	76	9	92	40	6	8	44	1.62
121361--121452	31	3.0	30	79	9	96	38	6	8	46	1.61
123104--123143	10	4.0	10	86	0	53	27	32	0	40	1.57
123189--123240	9	6.1	9	76	13	56	32	1	1	63	1.16
123182--123238	16	3.5	16	88	4	78	33	1	1	63	1.15
125976--126047	18	3.9	18	72	16	76	19	18	30	31	1.95
139018--139062	21	2.1	21	91	0	72	44	6	17	31	1.75
151402--151435	6	5.7	6	92	0	59	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151402--151436	18	1.9	18	100	0	70	57	0	0	42	0.99
161956--161990	2	18.0	2	94	5	63	51	0	0	48	1.00
162072--162127	23	2.4	23	93	0	94	44	14	0	41	1.45
164321--164362	20	2.1	20	100	0	84	38	19	23	19	1.93
167991--168020	2	15.0	2	100	0	60	50	0	50	0	1.00
175112--175190	39	2.0	39	97	0	149	40	20	2	36	1.66
179018--179082	31	2.1	31	88	0	94	21	18	23	36	1.95
179041--179166	30	4.2	30	86	2	137	21	19	26	32	1.97
182479--183301	413	2.0	404	97	2	1547	38	3	24	33	1.74
184040--184096	2	30.0	2	89	10	93	50	0	0	49	1.00
185281--185330	19	2.6	19	96	0	91	22	34	16	28	1.95
190575--190622	18	2.7	18	81	9	55	33	0	0	66	0.92
193741--193792	24	2.1	25	82	10	63	36	3	5	53	1.43
197739--197815	38	2.0	38	87	5	111	25	24	22	27	2.00
199147--199273	60	2.1	61	82	5	150	34	18	15	31	1.92
206915--206946	2	16.0	2	100	0	64	50	0	0	50	1.00
207182--207243	26	2.3	26	94	5	106	32	19	0	48	1.49
207989--208041	15	3.5	15	82	10	63	24	54	15	5	1.62
215449--215499	21	2.5	21	77	3	50	21	17	27	33	1.96
216276--216813	267	2.0	268	90	1	855	36	12	14	36	1.83
217192--217253	31	2.0	31	96	0	115	22	14	38	24	1.91
217257--217308	22	2.4	22	96	3	97	21	30	34	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217353--217439	29	3.0	28	76	6	84	19	32	34	13	1.91

Tables:   1

The End!