genome.fa.s2627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002627.1 Hibiscus syriacus cultivar Beakdansim tig00005355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98508

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11652--11705	20	2.8	19	86	5	81	25	27	5	40	1.78
11834--11906	28	2.5	29	82	10	87	32	6	2	57	1.39
12419--12468	17	2.8	18	79	14	59	24	4	6	66	1.32
18049--18079	15	2.1	15	93	0	53	54	0	0	45	0.99
35002--35042	13	3.1	14	86	10	59	46	29	24	0	1.53
36076--36299	126	1.8	125	89	2	317	36	8	11	43	1.72
36197--36414	115	1.9	115	89	0	337	37	9	11	42	1.73
37378--37435	28	2.1	27	84	9	73	67	3	1	27	1.17
38714--38761	3	16.0	3	95	0	87	64	2	0	33	1.05
38927--39993	76	14.0	76	96	0	1938	35	21	20	22	1.96
40668--40722	22	2.5	22	87	0	83	40	12	12	34	1.82
41095--41295	54	3.8	53	84	6	232	24	20	14	39	1.91
41095--41295	104	1.9	104	83	6	260	24	20	14	39	1.91
51193--51258	27	2.6	25	76	21	75	63	4	0	31	1.14
51207--51280	28	2.7	28	82	12	84	66	4	1	28	1.18
51850--51878	13	2.2	13	100	0	58	6	62	31	0	1.22
52557--52604	3	16.0	3	91	0	78	62	2	0	35	1.07
55021--55131	52	2.1	52	86	3	152	40	8	9	42	1.66
59201--59280	34	2.3	35	82	4	99	38	20	13	27	1.90
59746--59784	19	2.1	19	90	4	62	53	5	0	41	1.23
61885--61960	26	2.9	26	96	2	134	35	14	14	35	1.87
61819--62039	120	1.8	119	85	8	315	37	9	14	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61938--62104	65	2.5	66	86	7	216	37	8	14	39	1.76
62070--62200	26	4.9	27	72	15	110	38	9	17	35	1.82
62054--62225	81	2.1	80	90	5	283	38	8	16	36	1.79
62139--62365	94	2.4	94	88	0	348	33	7	17	41	1.78
62646--62702	30	1.9	30	92	0	96	47	8	8	35	1.66
71333--71368	2	18.0	2	100	0	72	50	0	0	50	1.00
71452--71481	14	2.1	14	93	0	51	36	26	13	23	1.92
74116--74213	32	3.1	30	79	5	106	20	30	24	24	1.98
74136--74194	30	1.9	31	89	3	93	25	27	22	25	2.00
74116--74210	31	3.1	31	83	4	120	21	30	25	23	1.99
76650--76674	13	1.9	13	100	0	50	24	8	32	36	1.84
77258--77331	30	2.6	29	81	14	82	74	4	6	14	1.18
77253--77331	8	9.1	8	72	13	50	74	3	6	15	1.16
77401--77441	3	13.7	3	100	0	82	68	0	0	31	0.90
77469--77531	28	2.2	30	80	8	76	61	0	9	28	1.27
77883--78019	21	6.6	21	79	9	147	31	24	19	24	1.98
78036--78149	20	5.6	20	75	19	119	35	19	21	23	1.95
78063--78301	21	11.6	21	73	17	155	26	20	23	29	1.99
78032--78156	41	3.0	41	98	0	241	35	19	21	24	1.96
78098--78319	62	3.6	61	87	6	297	24	20	23	30	1.99
78032--78296	41	6.4	40	81	9	186	28	20	22	28	1.98
78139--78316	21	8.6	21	76	14	172	22	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79171--79331	21	7.7	21	83	9	197	24	19	24	31	1.98
79195--79311	62	1.9	62	89	3	182	23	19	23	33	1.97
79174--79331	83	1.9	82	88	5	237	24	19	24	31	1.98
80060--80167	37	2.9	37	87	0	153	38	10	12	38	1.76
80246--80286	3	13.3	3	94	5	73	68	0	0	31	0.90
80245--80286	22	1.9	22	100	0	84	69	0	0	30	0.89
80249--80286	19	2.0	19	100	0	76	68	0	0	31	0.90
83047--83078	14	2.3	14	100	0	64	6	15	28	50	1.68
83948--83988	11	3.6	11	93	6	73	26	19	26	26	1.99
84224--84288	16	4.1	16	91	0	103	9	12	20	58	1.61
92124--92183	31	1.9	31	86	6	86	53	11	1	33	1.47
92365--92394	2	15.5	2	93	6	53	50	0	0	50	1.00
98477--98508	2	16.0	2	93	0	55	50	3	0	46	1.17

Tables:   1

The End!