genome.fa.s2629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002629.1 Hibiscus syriacus cultivar Beakdansim tig00005358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96816

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5278--5302	10	2.5	10	100	0	50	28	0	20	52	1.47
6941--7003	6	10.0	6	77	8	54	60	0	17	22	1.36
6941--7003	13	5.0	12	73	7	54	60	0	17	22	1.36
6940--7005	25	2.6	25	85	7	80	57	0	18	24	1.40
8294--8329	17	2.2	16	90	9	56	41	2	0	55	1.14
8297--8335	17	2.3	17	86	0	51	41	5	2	51	1.38
8400--8490	2	50.0	2	66	25	51	54	2	0	42	1.12
8387--8458	27	2.6	28	84	6	92	54	2	1	41	1.23
8400--8489	43	2.1	42	95	2	162	55	2	0	42	1.12
8400--8489	15	6.4	14	73	18	80	55	2	0	42	1.12
9307--9355	19	2.6	19	100	0	98	26	22	14	36	1.92
9695--9839	37	3.9	37	96	0	254	40	13	13	33	1.82
10435--10529	31	3.1	31	79	11	90	25	2	3	69	1.14
10455--10531	24	3.3	22	76	16	68	24	1	2	71	1.06
10452--10530	13	6.4	12	72	15	54	24	1	2	72	1.05
10452--10531	37	2.1	38	83	2	99	23	1	2	72	1.04
10465--10561	13	7.5	13	70	11	65	22	3	1	73	1.04
10515--10639	26	4.8	25	72	12	74	19	8	0	72	1.15
13043--13091	22	2.2	22	82	10	55	46	16	6	30	1.71
13355--13388	16	2.1	16	100	0	68	41	11	8	38	1.73
13709--13760	27	2.0	25	92	7	86	76	3	15	3	1.07
13711--13759	13	3.8	13	84	15	66	77	4	16	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14809--14924	32	3.6	32	82	4	128	30	12	21	35	1.91
16122--16228	36	2.9	36	92	1	187	24	22	14	38	1.92
16286--16398	34	3.3	34	91	2	172	42	16	8	31	1.79
17005--17151	37	4.0	37	94	0	249	40	12	16	31	1.85
17642--17688	19	2.4	19	75	10	51	23	6	4	65	1.33
17753--17837	20	4.4	19	71	23	54	25	2	1	70	1.06
17766--17869	52	2.0	52	81	9	124	21	3	0	74	1.04
20930--20977	8	5.8	9	79	16	50	37	0	0	62	0.95
27884--28605	229	3.1	229	97	1	1331	44	7	8	39	1.62
28836--28882	20	2.4	19	79	10	58	55	10	14	19	1.68
31101--31144	21	2.1	21	91	0	70	40	11	31	15	1.83
31178--31243	33	2.0	33	90	0	105	28	1	48	21	1.59
33039--33078	19	2.2	19	90	4	64	30	2	10	57	1.45
33199--34447	198	6.3	200	98	0	2357	36	15	17	30	1.90
33199--34447	398	3.1	399	97	0	2346	36	15	17	30	1.90
34428--34480	16	3.3	16	89	5	72	43	26	9	20	1.82
34537--34623	39	2.2	39	91	0	147	48	19	13	18	1.81
35044--35116	23	3.2	23	88	0	101	34	4	21	39	1.73
35262--35328	30	2.2	29	82	10	73	52	4	0	43	1.21
35472--35544	23	3.2	23	88	0	101	34	4	21	39	1.73
35901--35973	23	3.2	23	88	0	101	34	4	21	39	1.73
34842--36322	429	3.5	429	97	0	2763	40	7	12	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37508--37553	19	2.4	19	96	0	83	23	23	15	36	1.93
38520--38569	18	2.6	19	76	17	57	38	4	0	58	1.17
40865--40923	26	2.3	26	81	0	82	27	0	8	64	1.22
40901--40936	17	2.1	18	89	5	56	13	0	16	69	1.19
43585--43625	22	1.9	22	85	5	57	53	9	0	36	1.34
45174--45284	55	2.0	55	94	0	195	38	10	11	38	1.77
47189--47266	28	2.7	28	78	9	77	52	7	8	30	1.61
57338--57431	28	3.4	28	89	0	152	30	22	21	25	1.98
57277--57632	55	6.5	55	78	6	319	28	20	23	27	1.99
65928--65968	18	2.3	18	95	0	73	26	41	4	26	1.76
69856--70053	56	3.6	56	93	1	328	38	16	18	26	1.91
74321--74381	23	2.7	23	81	0	77	45	16	13	24	1.83
74390--74450	24	2.6	22	78	12	68	40	21	13	24	1.88
74407--74480	23	3.2	23	84	1	94	43	20	12	24	1.86
74407--74474	24	2.9	24	86	2	93	42	22	11	23	1.86
82153--82231	41	1.9	41	92	0	131	29	20	24	26	1.99
82215--82245	14	2.2	14	100	0	62	29	12	32	25	1.93
82178--82281	55	1.9	54	88	9	158	26	21	25	25	1.99
85579--85642	18	3.6	18	75	23	71	54	29	12	3	1.53
85578--85644	19	3.7	19	69	16	61	55	29	11	2	1.51
86889--86937	21	2.3	22	86	6	66	71	0	0	28	0.86
86891--86938	22	2.2	21	81	7	51	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93321--93389	20	3.5	20	80	4	77	28	17	28	24	1.97
96662--96713	27	2.0	27	84	3	70	25	13	19	42	1.87

Tables:   1

The End!