genome.fa.s263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000263.1 Hibiscus syriacus cultivar Beakdansim tig00000485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51557

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--182	19	2.6	20	90	6	86	37	27	13	21	1.91
237--327	20	4.6	20	83	8	64	36	27	19	16	1.93
274--425	20	7.7	20	82	8	204	32	26	20	21	1.97
277--421	78	1.9	78	89	2	229	32	26	20	21	1.97
798--863	32	2.1	32	91	0	105	10	22	19	46	1.80
942--996	20	2.8	20	88	0	74	41	18	25	14	1.88
982--1052	32	2.1	34	89	5	110	45	25	21	8	1.80
1058--1148	19	5.3	19	70	22	83	9	24	19	46	1.80
1048--1148	33	3.1	33	89	2	159	9	24	20	44	1.82
2823--3291	91	5.1	93	96	2	885	22	12	18	46	1.83
2823--3291	184	2.6	184	98	0	904	22	12	18	46	1.83
3335--3463	19	7.3	19	75	17	125	45	28	17	8	1.77
3371--3463	33	2.8	32	91	4	150	46	27	18	7	1.76
3335--3463	52	2.5	52	74	14	140	45	28	17	8	1.77
3459--3593	19	7.6	19	75	16	128	11	19	23	45	1.82
3481--3537	14	3.7	14	77	20	60	10	21	22	45	1.82
3464--3556	33	2.8	33	95	0	168	10	20	21	47	1.80
5489--5524	14	2.6	14	95	0	63	33	0	22	44	1.53
5631--5731	19	5.6	19	84	13	142	43	17	23	14	1.87
5759--6051	19	16.4	19	83	14	392	14	20	18	47	1.83
5737--6051	52	5.9	52	87	9	330	14	20	18	46	1.83
5759--6023	128	2.1	122	84	12	194	14	21	16	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8326--8350	12	2.1	12	100	0	50	0	28	0	72	0.86
8525--8571	24	2.0	24	87	8	69	38	21	14	25	1.92
9253--9621	20	18.5	20	84	5	433	20	18	26	35	1.95
22110--22153	20	2.3	19	85	11	63	20	25	9	45	1.80
22116--22153	20	1.9	20	94	0	67	21	23	10	44	1.83
25096--25151	24	2.3	24	96	0	103	28	19	16	35	1.93
25375--25440	30	2.2	30	88	0	96	10	30	24	34	1.89
30541--30582	22	1.9	22	85	0	57	33	0	0	66	0.92
30553--30628	40	1.9	40	86	10	111	27	3	0	68	1.07
30603--30674	2	38.0	2	80	15	82	43	2	0	54	1.15
30756--30886	42	3.1	42	75	14	119	24	3	3	68	1.20
30786--30892	36	2.9	36	76	15	103	25	3	3	67	1.24
30921--30945	11	2.3	11	100	0	50	16	8	0	76	1.02
30999--31041	19	2.4	17	81	14	50	20	4	2	72	1.14
31028--31052	11	2.3	11	100	0	50	16	0	0	84	0.63
31027--31078	19	2.8	18	77	8	59	15	0	7	76	0.99
31033--31093	26	2.3	28	75	13	67	13	1	8	77	1.07
34249--34386	69	2.0	69	90	2	215	36	23	15	25	1.93
35321--35413	32	2.8	33	85	3	125	30	10	20	38	1.87
36059--36282	106	2.1	106	83	0	277	35	24	19	20	1.95
36552--36739	37	5.4	37	69	16	112	29	18	13	38	1.89
36500--36869	102	3.6	102	92	0	605	31	18	12	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36654--36842	37	5.4	37	70	14	139	29	18	12	39	1.88
36907--37009	36	2.8	37	94	2	190	28	22	14	34	1.93
36920--37106	102	1.8	102	82	6	245	28	20	12	37	1.90
37024--37140	36	3.2	36	84	7	155	26	19	13	40	1.89
37126--37218	39	2.6	36	83	12	120	39	24	8	26	1.84
38366--38433	14	4.6	14	77	13	57	36	2	0	60	1.12
38371--38433	19	3.7	18	80	18	64	38	3	0	58	1.14
38487--38576	12	7.4	12	70	19	53	24	3	1	71	1.08
38787--38812	11	2.4	11	100	0	52	15	0	0	84	0.62
38679--38838	19	8.2	18	66	19	65	17	7	2	72	1.19
38793--38853	26	2.3	28	81	13	76	14	4	4	75	1.14
42882--43015	70	1.9	70	95	0	241	26	13	12	47	1.79
46079--46125	23	2.0	23	100	0	94	46	27	12	12	1.78
49632--49672	21	1.9	22	90	5	66	14	21	17	46	1.84

Tables:   1

The End!