genome.fa.s2630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002630.1 Hibiscus syriacus cultivar Beakdansim tig00005359_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78170

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018--1068	3	16.7	3	83	4	66	62	0	1	35	1.06
1343--1575	72	3.2	73	85	4	317	35	12	12	39	1.81
1788--1839	23	2.3	23	75	0	59	38	15	7	38	1.76
1644--1935	158	1.8	158	87	0	431	34	12	11	42	1.78
1807--2069	131	2.0	131	90	0	409	35	11	11	41	1.78
2078--2121	23	1.9	23	90	0	70	38	18	9	34	1.82
4595--4623	13	2.2	13	100	0	58	65	6	0	27	1.18
5249--5285	2	18.5	2	94	0	65	51	2	0	45	1.15
5341--5375	18	2.0	17	94	5	61	17	28	0	54	1.43
10777--10864	29	3.0	29	77	9	97	15	10	26	47	1.77
13369--13393	2	12.5	2	100	0	50	52	0	0	48	1.00
17554--17587	17	2.1	16	88	5	50	38	0	2	58	1.13
17561--17628	26	2.7	26	72	17	61	44	2	1	51	1.25
17719--17770	22	2.4	22	76	20	63	38	0	0	61	0.96
17725--17771	22	2.0	24	88	8	71	40	0	0	59	0.97
17728--17782	28	2.1	25	83	10	65	45	0	0	54	0.99
17727--17783	25	2.3	26	81	9	73	43	0	0	56	0.99
17763--17837	22	3.5	22	70	15	75	50	4	0	45	1.20
17772--17839	19	3.4	19	69	15	55	50	4	0	45	1.22
17772--17887	33	3.2	36	74	19	91	49	2	0	47	1.21
17830--17902	29	2.4	29	82	15	85	46	0	2	50	1.15
19433--19588	77	2.0	76	96	1	285	37	14	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22297--22348	21	2.4	22	81	12	63	21	28	23	26	1.99
22307--22348	21	2.0	21	90	4	68	23	30	21	23	1.99
23659--23774	58	2.0	58	96	0	214	25	23	16	34	1.95
24132--24174	12	3.4	12	75	12	50	39	20	9	30	1.84
24121--24180	26	2.3	26	97	0	111	38	23	8	30	1.84
25219--25261	22	2.0	22	86	9	61	65	2	0	32	1.06
25232--25267	11	3.3	11	88	0	54	69	0	0	30	0.89
25200--25267	18	3.9	18	75	16	56	64	4	0	30	1.13
25181--25268	32	2.6	33	75	13	90	70	3	0	26	1.03
25417--25486	35	1.9	37	83	11	92	71	2	1	24	1.08
25425--25545	41	2.9	42	80	12	135	72	4	3	19	1.15
25434--25563	41	3.2	40	77	14	126	71	4	4	19	1.21
26423--26468	2	23.5	2	78	12	51	50	0	4	45	1.21
27666--27750	34	2.5	34	90	0	125	21	16	25	36	1.94
27181--27716	240	2.2	240	90	0	829	25	18	22	33	1.97
27730--28107	110	3.3	109	70	17	310	25	18	22	33	1.97
27425--27990	274	2.1	274	94	0	979	24	18	22	34	1.96
29274--29453	88	2.0	88	90	0	279	32	20	15	31	1.94
33483--33551	17	4.1	16	83	10	77	76	2	8	11	1.11
33587--33656	37	1.9	35	86	11	97	65	2	0	31	1.07
33759--33817	2	29.5	2	100	0	118	50	0	0	49	1.00
33845--33913	34	2.0	36	83	11	90	71	2	1	24	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33862--33913	11	4.7	11	77	15	54	75	0	1	23	0.91
34002--34078	23	3.3	23	82	10	86	74	3	3	18	1.13
33993--34076	16	5.5	15	72	14	73	73	3	3	19	1.12
35182--35229	2	24.5	2	79	12	55	50	0	4	45	1.21
35188--35231	15	3.0	14	80	9	52	47	0	6	45	1.29
35182--35226	13	3.5	13	79	11	56	51	0	4	44	1.21
40160--40412	31	8.2	31	96	0	470	32	16	12	38	1.86
40922--41098	64	2.8	64	84	3	214	25	19	22	32	1.97
40922--41147	64	3.5	64	81	5	199	26	20	21	31	1.98
42410--42506	44	2.2	45	88	3	151	27	12	32	26	1.92
50210--50292	29	2.8	29	92	1	139	43	9	14	32	1.78
54980--55062	29	2.8	29	92	1	139	43	9	14	32	1.78
57140--57171	2	16.0	2	100	0	64	50	0	0	50	1.00
58575--58620	22	2.1	22	95	0	83	34	17	8	39	1.80
59870--59926	29	2.0	29	85	0	78	17	33	26	22	1.96
59937--60015	23	3.4	23	96	0	140	6	41	27	24	1.79
59937--60024	46	1.9	46	88	0	131	9	40	26	23	1.84
59988--60050	33	1.9	33	86	0	90	15	33	26	23	1.95
61348--61415	2	34.0	2	100	0	136	50	0	0	50	1.00
62046--62137	31	3.0	30	75	12	89	52	8	9	29	1.64
69633--69681	24	2.0	24	96	0	89	30	16	16	36	1.91
70523--70596	23	3.2	24	82	5	91	33	21	28	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72324--72374	23	2.3	22	83	9	68	23	21	21	33	1.97
73439--73507	23	3.0	23	75	8	68	31	26	21	20	1.98

Tables:   1

The End!