genome.fa.s2631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002631.1 Hibiscus syriacus cultivar Beakdansim tig00005360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119160

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971--1011	21	1.9	22	85	5	57	43	2	2	51	1.28
15288--15445	51	3.1	50	80	4	183	46	13	13	26	1.79
15262--15432	51	3.4	50	77	4	182	46	14	12	27	1.80
15541--15671	64	2.0	64	81	5	149	54	0	3	40	1.24
21235--21370	71	1.9	71	84	0	182	35	16	20	27	1.94
23956--24113	65	2.5	65	91	2	248	41	13	13	30	1.84
26857--26889	12	2.8	12	90	0	57	24	45	9	21	1.80
30437--30590	59	2.6	60	83	6	179	40	3	22	33	1.72
30437--30619	60	3.1	60	82	3	190	40	3	21	33	1.72
31079--31105	13	2.1	13	100	0	54	40	0	0	59	0.98
34459--34535	31	2.5	31	80	2	75	37	22	15	24	1.93
40358--40384	2	13.5	2	100	0	54	51	0	0	48	1.00
42787--42812	11	2.4	11	100	0	52	42	0	0	57	0.98
42858--42972	42	2.8	42	77	7	121	48	0	0	50	1.06
43054--43149	41	2.5	39	79	14	103	47	2	0	50	1.12
43148--43203	14	3.9	14	75	13	60	44	1	3	50	1.29
43121--43199	29	2.7	29	83	11	90	48	1	2	48	1.23
43153--43218	29	2.3	29	86	5	89	46	0	4	48	1.22
47822--47855	16	2.1	16	88	0	50	35	2	0	61	1.11
47797--47915	39	3.1	38	75	17	118	36	12	0	49	1.47
50079--50153	23	3.2	23	86	1	96	26	12	16	45	1.82
50134--50183	23	2.2	23	85	0	64	28	16	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50173--50220	22	2.2	22	84	0	60	20	4	16	58	1.55
51430--51482	22	2.4	22	100	0	106	20	13	30	35	1.91
65394--65443	25	2.0	26	88	4	75	28	28	16	28	1.97
66937--67018	41	2.0	41	100	0	164	36	14	21	26	1.93
67435--67511	35	2.1	37	80	4	86	38	3	2	54	1.33
78057--78109	21	2.5	21	81	0	61	20	24	18	35	1.95
78360--78395	18	2.0	18	89	10	56	33	33	16	16	1.92
78721--78802	34	2.4	34	100	0	164	41	23	19	15	1.90
78742--78823	20	4.4	20	72	17	77	39	24	18	18	1.92
78837--78923	20	4.4	20	83	1	86	16	17	21	44	1.86
78888--78931	20	2.2	20	87	0	61	13	13	20	52	1.74
80796--80921	20	6.6	20	81	10	156	42	19	19	19	1.90
80819--80940	34	3.4	34	77	12	127	43	18	20	18	1.88
80796--80940	74	2.0	74	88	0	218	43	18	19	18	1.88
81474--81578	42	2.5	41	76	4	102	22	34	19	23	1.96
83118--83192	33	2.2	34	95	2	134	13	22	20	44	1.86
83184--83272	20	4.4	20	84	2	117	17	21	25	34	1.96
83186--83272	40	2.2	40	89	4	131	18	20	25	35	1.95
86623--86711	20	4.5	19	95	2	124	22	19	20	38	1.94
86623--86732	40	2.7	40	84	6	150	21	20	20	38	1.94
86737--86779	21	2.0	21	86	0	59	37	18	23	20	1.94
88240--88286	19	2.6	18	78	15	60	31	2	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88307--88406	25	3.9	24	67	17	58	18	10	2	70	1.25
88290--88341	23	2.2	23	86	3	68	19	7	0	73	1.07
88432--88497	27	2.4	26	80	9	69	19	4	3	72	1.15
88960--89014	29	1.9	28	88	3	83	29	27	12	30	1.93
89384--89424	18	2.3	18	91	4	66	29	4	2	63	1.28
91710--91794	35	2.5	33	78	14	91	27	8	10	54	1.63
95692--95731	2	20.0	2	89	0	62	55	0	0	45	0.99
97170--97200	3	10.3	3	100	0	62	32	0	0	67	0.91
97661--97833	20	8.5	20	78	8	100	28	23	19	28	1.98
97672--97726	21	2.5	22	79	5	67	21	25	20	32	1.97
97711--97841	40	3.3	40	80	6	131	32	22	19	25	1.98
97755--97842	20	4.4	20	92	0	131	27	26	20	26	1.99
98663--98716	24	2.2	24	93	0	90	20	18	20	40	1.91
98906--98942	14	2.6	14	91	4	56	51	21	21	5	1.68
100978--101012	18	1.9	18	94	0	61	54	25	2	17	1.57
101072--101341	140	1.9	140	96	0	504	29	12	15	42	1.84
101312--101585	20	14.6	20	70	16	167	34	20	18	26	1.96
101394--101576	74	2.5	74	86	3	262	34	19	19	26	1.96
101445--101570	34	3.5	34	74	16	128	34	19	20	25	1.96
101312--101536	94	2.4	94	80	5	233	34	20	18	27	1.96
101575--101632	20	2.9	20	81	0	71	10	17	27	44	1.81
101731--101792	14	4.3	14	77	6	61	46	14	0	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103201--103275	21	3.6	21	77	0	69	22	20	32	25	1.98
103200--103302	42	2.5	42	76	6	102	23	19	33	24	1.97
103788--103833	20	2.4	19	89	7	67	39	28	17	15	1.90
103877--103944	20	3.4	20	87	0	100	20	19	25	35	1.96
104092--104141	18	2.8	18	100	0	100	42	6	20	32	1.76
105882--106007	20	6.4	20	85	2	114	46	21	17	15	1.84
105882--106007	19	6.5	19	86	4	128	46	21	17	15	1.84
106393--106435	22	2.0	22	100	0	86	18	13	41	25	1.88
106616--106707	20	4.6	20	91	0	148	23	20	26	29	1.99
107511--107553	21	2.1	21	95	4	79	30	27	18	23	1.98

Tables:   1

The End!