genome.fa.s2633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002633.1 Hibiscus syriacus cultivar Beakdansim tig00005367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111620

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1255--1309	20	2.6	21	80	8	67	70	3	9	16	1.27
1811--1846	15	2.3	16	90	4	56	66	8	8	16	1.42
2044--2152	32	3.3	32	78	10	103	55	4	14	25	1.59
6222--6304	43	1.9	44	85	7	116	30	24	13	32	1.93
6685--6717	16	2.1	16	100	0	66	30	12	12	45	1.78
6922--6980	2	30.5	2	93	6	104	49	0	0	50	1.00
11901--11979	6	12.8	6	73	24	51	77	3	5	13	1.08
11901--11979	19	4.3	18	71	16	63	77	3	5	13	1.08
12695--12764	34	2.1	33	86	2	95	54	4	14	27	1.58
12749--12787	19	2.1	19	95	0	69	51	5	17	25	1.66
12767--12840	32	2.3	32	81	4	96	50	4	14	31	1.62
19622--19687	19	3.4	19	89	4	105	15	24	7	53	1.68
22125--22176	26	2.0	26	100	0	104	42	15	15	26	1.87
24550--24609	21	2.9	21	87	0	84	36	31	10	21	1.87
27686--27725	2	20.0	2	100	0	80	50	0	0	50	1.00
33185--33250	32	2.1	32	100	0	132	33	25	12	28	1.92
33958--34061	37	2.8	37	86	0	136	42	13	14	29	1.84
34417--34459	18	2.5	17	85	7	61	25	4	2	67	1.22
34416--34549	12	11.1	12	68	24	61	32	4	1	61	1.25
39229--39764	183	2.9	183	95	0	950	27	20	21	30	1.98
40899--41012	36	3.2	34	71	9	86	25	16	14	43	1.85
40883--41066	72	2.5	75	84	8	220	27	17	13	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41074--41194	39	3.2	39	70	11	133	28	21	13	36	1.91
41074--41211	39	3.6	39	71	9	131	29	21	12	36	1.90
41114--41429	102	3.1	102	92	3	494	31	20	11	36	1.88
41329--41404	36	2.1	36	87	0	107	23	21	14	40	1.90
41573--42234	105	6.3	105	89	3	931	33	26	18	21	1.96
42778--42881	37	2.8	37	86	0	136	42	13	14	29	1.84
43237--43279	18	2.5	17	85	7	61	25	4	2	67	1.22
43249--43355	55	1.9	55	82	14	132	32	1	1	63	1.16
46163--46241	6	13.2	6	93	0	95	40	1	0	58	1.06
52195--52227	2	17.5	2	87	12	52	54	0	0	45	0.99
53561--53627	34	2.0	34	90	0	107	34	17	10	37	1.85
53976--54206	69	3.3	71	84	7	228	30	21	11	36	1.89
54022--54206	70	2.7	68	87	5	255	31	21	10	36	1.88
54181--54252	33	2.2	33	94	0	126	30	16	13	38	1.88
54181--54271	33	2.8	33	89	3	121	29	17	14	38	1.89
54971--55013	3	14.3	3	100	0	86	32	0	0	67	0.91
55837--55867	16	1.9	16	100	0	62	12	22	19	45	1.84
60751--60784	16	2.1	16	88	0	50	0	17	8	73	1.08
63268--63312	23	2.0	23	90	0	72	24	28	24	22	1.99
64343--64377	18	1.9	18	88	11	54	22	17	5	54	1.64
64961--65005	21	2.1	21	87	0	63	15	24	28	31	1.96
68065--68109	23	2.0	23	90	0	72	24	28	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69149--69183	18	1.9	18	88	11	54	22	17	5	54	1.64
69764--69808	21	2.1	21	83	0	54	15	22	28	33	1.95
76511--76700	87	2.2	87	92	0	317	35	24	14	26	1.93
77554--77615	5	13.0	5	72	14	51	37	3	1	58	1.24
80797--80841	23	2.0	23	82	8	56	24	0	8	66	1.20
91953--92020	14	4.7	14	77	12	66	26	27	20	25	1.99
92172--92217	18	2.6	18	83	10	51	28	8	8	54	1.61
92921--92976	27	2.1	27	86	6	78	42	17	16	23	1.88
95511--95559	23	2.1	24	92	3	82	38	14	20	26	1.91
100842--100892	19	2.6	20	81	3	68	25	29	17	27	1.98
103672--103736	29	2.2	30	81	15	73	40	7	7	44	1.62
107310--107364	22	2.5	23	80	11	62	30	0	0	69	0.89
107311--107361	21	2.4	21	84	9	68	29	0	0	70	0.87
108606--108671	19	3.6	19	75	17	68	3	12	30	54	1.52
108608--108671	18	3.6	18	75	23	71	3	12	29	54	1.53

Tables:   1

The End!