genome.fa.s2634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002634.1 Hibiscus syriacus cultivar Beakdansim tig00005368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131683

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10892--10949	20	2.9	20	97	0	107	44	10	24	20	1.82
12267--12707	51	8.8	51	84	4	542	25	12	15	46	1.81
12267--12701	202	2.2	198	86	2	584	26	12	15	45	1.82
12266--12703	147	2.9	149	86	3	524	26	12	15	45	1.82
12267--12699	101	4.3	99	86	4	514	26	12	15	45	1.82
13246--13347	48	2.1	49	92	1	170	19	6	30	43	1.77
16475--16522	2	24.0	2	100	0	96	50	0	0	50	1.00
16534--16561	9	3.1	9	100	0	56	42	21	0	35	1.53
18343--18401	28	2.1	28	100	0	118	28	13	10	47	1.75
18599--18629	2	15.5	2	100	0	62	48	0	0	51	1.00
20400--20478	35	2.3	35	78	6	97	40	17	1	40	1.58
20474--20543	35	2.0	34	91	2	113	35	1	22	40	1.63
33819--33849	16	1.9	16	93	0	53	67	16	3	12	1.35
34695--34764	30	2.3	30	82	0	86	18	11	8	61	1.54
34677--34824	60	2.5	60	78	3	147	18	9	8	63	1.49
34719--34855	30	4.6	30	84	0	150	18	8	8	64	1.47
40789--41064	3	89.0	3	80	7	239	7	29	4	59	1.44
41093--41137	3	15.0	3	100	0	90	0	33	0	66	0.92
41179--41249	3	23.7	3	100	0	142	0	66	0	33	0.92
44753--44778	12	2.2	12	100	0	52	26	23	15	34	1.94
47013--47058	20	2.6	18	86	13	60	41	10	23	23	1.86
47197--47275	35	2.2	38	80	13	94	50	2	1	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52464--52629	4	41.5	4	100	0	332	50	24	0	25	1.50
53572--53612	22	2.0	20	85	9	55	39	0	17	43	1.49
55153--55194	22	1.9	22	85	9	59	71	4	0	23	1.05
55824--55857	18	1.9	17	88	5	50	14	23	32	29	1.94
56608--56633	3	8.7	3	100	0	52	69	0	0	30	0.89
56764--56792	12	2.3	13	94	5	51	34	17	34	13	1.89
59945--59992	3	17.0	3	80	20	50	29	0	2	68	1.01
61141--61199	29	2.0	30	83	9	77	28	6	3	61	1.38
62349--62391	19	2.2	19	84	12	52	41	0	0	58	0.98
62355--62391	19	2.0	19	89	5	58	45	0	0	54	1.00
64604--64657	27	2.0	27	96	0	99	42	0	22	35	1.54
73143--73331	96	2.0	95	89	2	290	23	15	22	37	1.93
73556--73631	31	2.5	31	82	4	91	14	9	27	48	1.74
73975--74010	18	2.0	18	88	0	54	27	22	5	44	1.75
77774--77803	11	2.9	10	90	9	51	40	0	0	60	0.97
77774--77812	20	1.9	20	89	5	60	38	2	0	58	1.12
77780--77835	28	2.0	29	82	10	71	35	1	3	58	1.26
78287--78312	2	13.0	2	100	0	52	0	50	0	50	1.00
82757--82802	2	23.0	2	100	0	92	50	0	0	50	1.00
83231--83296	28	2.4	29	78	12	77	66	3	1	28	1.15
84525--84588	3	21.0	3	81	15	60	60	0	0	39	0.97
84525--84587	25	2.6	25	87	2	83	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84985--86001	113	9.0	113	89	0	1505	27	20	15	36	1.92
86348--86411	22	2.9	22	83	4	76	37	10	15	35	1.83
89737--89799	32	2.0	32	96	0	117	22	19	15	42	1.88
90249--90277	9	3.3	9	95	4	51	17	13	0	68	1.20
90253--90293	8	5.0	8	93	3	55	9	17	0	73	1.09
93088--93133	23	2.0	23	100	0	92	26	13	43	17	1.85
95517--95583	28	2.5	28	83	7	77	61	1	4	32	1.25
96052--96079	2	14.0	2	100	0	56	50	0	0	50	1.00
96080--96117	17	2.2	18	90	4	60	39	2	2	55	1.28
97819--97888	3	23.0	3	80	13	81	61	0	1	37	1.05
97823--97888	28	2.4	28	87	5	89	62	0	1	36	1.05
97819--97888	19	3.8	18	83	10	81	61	0	1	37	1.05
97830--97888	22	2.8	22	85	10	79	61	0	1	37	1.07
97824--97888	25	2.6	25	87	4	87	61	0	1	36	1.05
98204--98265	29	2.1	30	84	3	81	38	16	8	37	1.78
101792--101838	21	2.2	21	96	0	85	36	6	21	36	1.79
102890--102933	21	2.1	21	100	0	88	25	4	18	52	1.64
102893--102944	21	2.5	21	90	0	68	21	7	23	48	1.75
105982--106041	23	2.6	23	97	0	111	23	28	30	18	1.98
106666--106728	23	2.9	23	76	6	69	23	26	19	30	1.98
108180--108228	20	2.5	20	86	0	71	34	24	20	20	1.96
108302--108341	20	2.0	20	100	0	80	10	15	20	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108306--108349	20	2.2	20	87	0	61	13	13	20	52	1.74
110220--110323	20	5.5	20	81	13	130	39	22	19	19	1.93
110223--110344	54	2.3	54	92	2	201	40	21	20	17	1.91
110460--110543	20	4.2	20	87	0	114	23	21	19	35	1.96
110457--110533	40	1.9	40	91	0	127	24	20	16	37	1.93
111023--111130	21	5.1	21	73	7	85	21	36	18	24	1.95
112487--112522	14	2.6	14	90	0	54	30	0	22	47	1.52
112624--112719	33	2.9	34	85	3	131	43	19	21	14	1.87
112787--112875	20	4.4	20	84	2	108	17	19	24	38	1.93
115322--115368	24	2.0	24	95	0	85	34	17	21	27	1.95
115326--115377	24	2.2	24	85	0	68	36	19	19	25	1.95
116223--116314	20	4.6	20	86	2	114	21	18	21	38	1.94
116307--116347	21	2.0	21	85	0	55	41	19	21	17	1.90
123856--123924	23	3.0	23	74	16	70	20	21	26	31	1.98
124991--125041	23	2.3	22	83	9	68	33	21	21	23	1.97
126745--126819	23	3.2	23	79	9	89	16	28	21	34	1.94
127646--127694	24	2.0	24	96	0	89	36	16	16	30	1.91

Tables:   1

The End!