Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002635.1 Hibiscus syriacus cultivar Beakdansim tig00005369_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56682

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1183
11
3.2
11
88
4
54
86
0
2
11
0.68
12458--12489
15
2.1
15
94
0
55
81
3
0
15
0.82
12639--12704
25
2.6
25
78
0
69
40
6
12
40
1.67
12888--12943
2
28.0
2
100
0
112
50
0
0
50
1.00
13094--13126
14
2.3
15
90
10
52
21
0
0
78
0.75
15665--15750
41
2.1
42
84
2
111
24
11
19
44
1.84
16590--16633
12
3.7
12
81
0
52
65
2
13
18
1.36
18210--18243
10
3.3
10
92
8
59
0
8
0
91
0.43
18210--18243
11
3.2
11
95
4
61
0
8
0
91
0.43
19620--19649
10
3.1
10
95
4
53
90
0
0
10
0.47
19620--19684
19
3.2
19
78
16
67
80
3
3
13
0.96
20096--20130
12
2.8
12
86
4
52
62
0
11
25
1.28
20868--20900
14
2.4
14
94
0
57
18
27
33
21
1.96
21306--21524
104
2.1
102
83
1
276
37
13
14
34
1.85
27332--27405
30
2.5
30
97
0
139
41
10
27
20
1.85
29340--29393
22
2.5
22
87
0
72
20
20
25
33
1.97
29727--29767
21
1.9
22
85
14
59
36
4
9
48
1.58
36969--37043
37
2.0
37
97
0
141
37
17
22
22
1.94
39852--40007
64
2.5
63
83
9
219
29
15
21
33
1.94
40364--40407
21
2.0
23
86
8
65
27
34
2
36
1.70
40664--40702
16
2.4
18
80
20
50
61
20
0
17
1.34
42662--42725
24
2.9
21
76
17
67
29
17
18
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48545--48569
10
2.5
10
100
0
50
28
0
20
52
1.47
50220--50288
6
11.0
6
80
7
66
60
0
17
21
1.35
50220--50288
19
3.6
19
75
11
70
60
0
17
21
1.35
50219--50288
13
5.6
12
75
13
61
60
0
17
22
1.37
50219--50288
25
2.8
25
78
8
88
60
0
17
22
1.37
51348--51402
2
28.0
2
96
3
103
50
0
0
49
1.00
51625--51651
14
1.9
14
100
0
54
44
3
0
51
1.19
51633--51684
28
1.9
28
81
14
65
36
5
3
53
1.43
51715--51798
23
3.9
23
76
19
90
54
3
0
41
1.17
51720--51776
27
2.1
28
86
3
80
52
3
0
43
1.18
51723--51798
32
2.4
32
80
10
86
53
2
0
43
1.14
52961--53103
37
3.9
37
92
3
245
40
13
12
33
1.82
52961--53105
72
2.0
74
94
2
258
40
13
13
33
1.84
53667--53819
73
2.0
77
80
12
176
23
3
1
70
1.14
53761--53849
25
3.4
25
71
19
67
16
6
2
74
1.14
56524--56557
16
2.1
16
100
0
68
41
11
8
38
1.73

Tables:   1

The End!