genome.fa.s2636.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002636.1 Hibiscus syriacus cultivar Beakdansim tig00005374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58234

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2531--2600	26	2.6	27	79	6	79	41	2	1	54	1.24
2650--2722	29	2.5	28	82	6	76	34	4	2	58	1.31
2727--2785	21	2.9	21	78	16	70	54	1	0	44	1.10
2747--2823	27	3.1	24	79	15	86	54	0	1	44	1.08
4721--4786	28	2.4	28	75	12	73	53	9	0	37	1.33
5240--5281	21	2.0	21	86	9	59	21	19	2	57	1.52
5959--6075	21	5.8	21	62	19	61	35	25	17	20	1.95
5988--6075	20	4.4	19	73	17	70	37	25	18	19	1.94
5995--6073	42	1.9	41	87	7	115	37	22	17	21	1.94
6647--6684	20	1.9	20	88	0	58	31	31	15	21	1.94
6695--6852	65	2.5	62	86	7	203	34	23	17	24	1.95
12580--12632	21	2.5	22	84	3	63	30	20	22	26	1.98
12580--12659	23	3.6	23	76	8	76	27	23	22	26	2.00
15981--16107	20	6.3	20	81	5	121	31	25	18	25	1.97
15952--16087	61	2.2	60	78	5	148	34	24	18	22	1.96
16601--16659	20	3.0	20	87	0	73	16	18	22	42	1.89
16794--16848	25	2.2	24	78	15	58	20	9	18	52	1.71
17975--18019	18	2.5	18	96	0	81	28	42	13	15	1.85
18506--18550	20	2.3	20	84	3	65	40	20	22	17	1.92
18534--18592	19	3.4	19	73	22	74	47	18	18	15	1.83
18550--18608	14	3.9	14	72	20	55	49	20	16	13	1.80
18534--18611	33	2.4	33	97	0	147	46	20	19	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18623--18679	14	3.9	13	77	22	60	10	17	22	49	1.77
18625--18695	33	2.2	31	92	5	115	14	16	21	47	1.81
18689--18735	20	2.3	20	89	7	69	17	21	25	36	1.94
20602--20637	14	2.6	14	90	0	54	30	0	22	47	1.52
20764--20817	14	3.5	14	75	22	54	46	20	22	11	1.82
20777--20822	14	2.8	17	75	25	53	45	19	21	13	1.84
20841--20917	20	3.9	20	84	3	111	16	20	22	40	1.91
21249--21321	20	3.7	20	94	0	128	24	20	28	26	1.99
21307--21366	20	3.0	20	80	2	75	20	15	23	41	1.89
21229--21366	41	3.4	41	81	6	154	22	18	24	34	1.96
21229--21384	41	3.8	41	78	3	118	21	19	24	33	1.97
27054--27144	21	4.3	21	78	8	103	37	23	16	23	1.94
27059--27141	43	2.0	42	90	2	130	37	20	16	25	1.93
32342--32416	31	2.4	31	84	0	87	34	13	10	41	1.79
34010--34129	2	61.0	2	96	3	226	50	0	0	50	1.00
34660--34701	2	21.0	2	100	0	84	50	0	0	50	1.00
36255--36294	15	2.7	15	88	3	55	70	0	2	27	1.01
36131--36564	216	2.0	218	84	4	574	47	7	7	37	1.61
42697--42824	65	2.0	65	85	3	177	32	19	19	28	1.96
52701--52790	31	2.8	32	80	9	112	53	4	15	26	1.61
57215--57245	15	2.1	15	100	0	62	32	12	12	41	1.81

Tables:   1

The End!