Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002638.1 Hibiscus syriacus cultivar Beakdansim tig00005382_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80253

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1203--1605
206
1.9
208
85
4
555
33
16
8
41
1.80
3921--3964
16
2.5
18
85
10
56
25
4
0
70
1.06
4067--4145
25
3.2
22
75
20
59
27
1
2
68
1.10
4084--4151
24
2.9
23
87
10
93
23
0
2
73
0.97
11218--11273
25
2.3
25
96
3
105
48
0
17
33
1.48
12356--12402
21
2.2
21
88
0
67
23
23
14
38
1.92
13080--13126
19
2.5
19
89
6
69
42
6
12
38
1.69
18555--18604
13
4.1
12
73
21
50
76
0
4
20
0.95
18555--18604
18
2.7
18
84
9
66
76
0
4
20
0.95
20092--20186
3
32.3
3
77
12
90
34
3
2
60
1.25
20083--20171
17
6.0
16
75
21
79
37
4
1
57
1.26
20129--20186
17
3.5
17
93
4
93
31
3
3
62
1.29
21125--21156
11
2.9
11
100
0
64
18
6
0
75
1.01
21124--21156
16
2.1
16
88
11
50
21
6
0
72
1.05
22561--22653
46
2.0
47
83
6
118
36
12
20
30
1.90
23969--24018
21
2.4
21
86
0
73
16
22
18
44
1.87
27450--27488
21
1.9
20
89
5
60
10
10
0
79
0.94
28308--28360
17
3.1
17
76
17
56
75
0
3
20
0.96
32156--32248
46
2.0
47
87
6
136
36
12
20
30
1.90
44440--44490
27
1.9
27
96
4
95
15
3
27
52
1.60
44441--44500
26
2.3
27
88
8
88
18
3
26
51
1.61
47865--47905
21
1.9
22
85
5
57
46
0
17
36
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53492--53602
57
1.9
57
96
0
204
35
15
19
29
1.93
55824--55855
16
2.0
16
100
0
64
50
18
18
12
1.78
56771--57326
84
6.7
83
76
4
541
29
25
20
24
1.99
56771--57326
249
2.2
247
88
0
790
29
25
20
24
1.99
58024--58178
35
4.3
36
78
7
147
46
4
7
41
1.53
58024--58245
76
3.0
72
80
11
197
46
3
7
42
1.48
58191--58280
35
2.6
36
76
16
91
44
1
2
52
1.20
59354--59420
26
2.6
26
95
0
125
32
20
20
25
1.97
59576--59617
4
10.5
4
84
0
57
26
4
0
69
1.08
59687--59744
24
2.5
21
77
20
62
15
5
5
74
1.18
59811--59884
39
1.9
39
86
5
107
13
12
0
74
1.08
59850--59874
11
2.3
11
100
0
50
16
8
0
76
1.02
59829--59882
19
2.8
18
81
10
63
14
7
0
77
0.97
60345--60490
35
4.0
35
78
9
114
47
4
7
40
1.51
60390--60538
35
4.1
36
75
9
126
45
5
8
40
1.58
60401--60520
37
3.2
36
78
9
118
46
5
7
40
1.54
60389--60532
74
2.0
71
82
8
173
45
4
8
41
1.56
60504--60562
24
2.5
24
100
0
118
42
5
11
40
1.64
60581--60661
33
2.4
34
80
12
87
48
1
1
49
1.17
60679--60703
8
3.1
8
100
0
50
12
0
0
88
0.53
61730--61796
26
2.6
26
80
0
89
32
19
22
25
1.97
61953--61998
4
11.5
4
85
0
65
26
4
0
69
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62727--62933
37
5.4
37
77
11
170
44
4
8
42
1.55
62771--62950
74
2.5
72
80
8
195
45
3
8
41
1.54
62759--62956
35
5.4
36
75
15
149
44
4
8
41
1.55
64404--64496
34
2.6
34
83
6
96
50
5
5
38
1.48
64434--64694
35
7.1
36
72
15
162
46
4
5
43
1.45
64429--64582
74
2.1
75
78
11
174
48
4
6
40
1.49
64389--64565
39
4.8
38
75
12
140
49
5
5
40
1.49
64701--64738
6
6.5
6
81
6
51
18
0
0
81
0.69
64703--64744
16
2.5
17
92
3
68
19
0
0
80
0.70
65687--65711
9
2.8
9
100
0
50
0
56
0
44
0.99
65782--65848
26
2.6
26
92
0
107
31
17
20
29
1.96
66005--66046
4
10.5
4
84
0
57
26
4
0
69
1.08
66178--66214
16
2.2
17
95
4
67
29
5
0
64
1.15
66833--67061
35
6.1
36
78
13
182
44
3
8
42
1.52
66862--67061
110
1.8
110
83
13
268
46
4
8
42
1.52
66877--67127
75
3.4
73
77
11
192
45
2
7
43
1.47
66869--67158
35
7.9
36
70
18
102
46
3
7
43
1.47
68448--68483
4
9.0
4
87
0
54
25
5
0
69
1.10
68443--68483
20
2.0
20
100
0
82
24
9
0
65
1.22
68677--68725
18
2.6
19
81
12
57
12
18
0
69
1.19
68809--68835
3
9.0
3
100
0
54
33
0
0
66
0.92
69394--69460
26
2.6
26
85
0
89
34
20
17
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69617--69658
4
10.5
4
84
0
57
26
4
0
69
1.08
69772--69798
6
4.5
6
100
0
54
18
0
0
81
0.69
70458--70537
40
2.1
38
84
9
101
46
3
6
43
1.46
70522--70629
37
2.9
36
76
10
99
45
3
8
42
1.52
70771--70813
15
2.8
16
89
3
61
16
2
0
81
0.79
71634--71663
14
2.1
14
100
0
60
20
0
40
40
1.52
72037--72086
8
6.2
8
90
0
55
26
10
0
64
1.25
72199--72223
3
8.3
3
100
0
50
36
0
0
64
0.94
72812--72878
2
33.5
2
100
0
134
50
0
0
49
1.00
72886--72986
42
2.4
42
83
8
118
44
2
7
44
1.48
72965--73118
35
4.3
36
76
10
129
44
4
9
41
1.56
72923--73112
75
2.5
71
77
11
177
46
4
8
40
1.55
73090--73186
42
2.5
36
79
14
97
43
1
7
48
1.37
73140--73174
13
2.6
13
90
4
52
48
0
0
51
1.00
73231--73268
6
6.5
6
81
6
51
18
0
0
81
0.69
74614--74682
27
2.6
27
78
17
74
17
4
2
75
1.09

Tables:   1

The End!