genome.fa.s2639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002639.1 Hibiscus syriacus cultivar Beakdansim tig00005383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106721

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2303--2625	49	6.6	49	87	3	411	34	12	21	31	1.90
2302--2625	97	3.3	98	85	5	406	34	12	21	31	1.90
5319--5356	8	4.6	8	90	3	58	81	0	0	18	0.69
5936--6055	63	1.9	62	86	5	170	55	13	0	31	1.39
6028--6071	18	2.3	19	84	7	54	61	4	0	34	1.16
6036--6097	32	1.9	32	87	12	92	61	9	0	29	1.28
5979--6152	76	2.3	74	81	6	190	55	10	1	32	1.41
7980--8029	12	4.2	12	75	17	50	74	8	6	12	1.22
13443--13471	12	2.3	13	94	5	51	75	0	0	24	0.80
14054--14175	64	1.9	63	88	5	183	54	13	0	31	1.46
14089--14150	19	3.2	19	74	4	52	54	12	0	32	1.38
14156--14217	32	1.9	32	84	12	83	62	11	0	25	1.28
14098--14272	76	2.3	75	81	5	192	56	10	1	32	1.40
15074--15108	17	2.1	16	94	5	61	51	0	31	17	1.45
15471--15517	17	2.8	17	90	6	69	46	0	19	34	1.50
15842--16152	49	6.3	49	83	5	351	36	13	20	29	1.91
19003--19054	26	2.0	26	100	0	104	23	11	23	42	1.86
19833--19867	17	2.0	18	88	5	54	22	22	17	37	1.94
22255--22298	22	1.9	24	86	9	65	45	34	9	11	1.72
23228--23722	136	3.7	136	89	0	690	28	22	17	31	1.96
24054--24288	54	4.4	53	84	5	285	39	15	10	34	1.82
30692--30778	45	1.9	45	80	0	102	34	24	8	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31190--31223	17	1.9	18	88	5	52	67	11	0	20	1.21
32175--32367	66	3.1	66	65	23	189	47	10	9	32	1.69
32198--32379	55	3.1	55	63	26	129	48	10	8	32	1.67
32143--32383	121	2.0	121	100	0	482	48	9	8	32	1.66
34136--34522	195	2.0	195	81	2	463	37	17	19	25	1.93
36065--36236	85	2.0	83	84	6	222	36	19	18	26	1.95
36095--36319	85	2.6	85	80	4	222	34	19	18	27	1.95
41141--41358	45	4.8	45	84	1	267	37	22	11	28	1.88
46081--46199	45	2.6	45	91	0	193	36	26	10	26	1.89
54248--54599	49	7.1	50	77	3	372	28	23	14	34	1.93
54229--54599	99	3.8	99	88	0	573	28	23	13	34	1.93
59595--59703	55	2.0	55	90	0	173	36	8	17	37	1.80
59600--59720	55	2.2	55	83	0	161	37	6	17	38	1.76
59841--60252	81	5.1	81	88	0	554	35	10	21	31	1.88
62709--62770	2	31.0	2	100	0	124	50	0	0	50	1.00
64435--64601	90	1.9	90	93	2	291	47	6	10	35	1.65
66602--66755	77	2.0	77	96	0	281	32	17	23	26	1.97
72615--73166	81	6.8	81	88	0	798	34	10	21	32	1.88
76377--76414	2	19.0	2	100	0	76	50	0	0	50	1.00
83795--84082	97	3.0	97	84	1	371	41	10	21	26	1.85
84500--84786	45	6.6	45	74	10	247	37	12	21	28	1.90
84679--84791	46	2.5	46	82	1	120	42	11	19	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93895--93939	11	4.0	12	80	11	51	15	15	2	66	1.35
96683--96959	97	2.9	97	91	1	425	39	11	22	25	1.88
97377--97449	24	3.2	24	67	25	75	35	12	21	30	1.90
97357--97642	45	6.4	45	83	5	321	38	12	21	26	1.89
97357--97425	21	3.1	21	65	25	52	37	13	23	26	1.91
97357--97642	89	3.2	89	81	5	328	38	12	21	26	1.89
99934--100035	32	3.2	32	87	0	150	36	16	13	33	1.88
101224--101258	18	1.9	18	88	0	52	31	20	11	37	1.88
101708--101749	21	2.0	21	86	9	59	69	0	26	4	1.08
106449--106488	20	2.0	21	90	5	64	42	25	0	32	1.55

Tables:   1

The End!