genome.fa.s2640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002640.1 Hibiscus syriacus cultivar Beakdansim tig00005384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138979

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5162--5205	23	1.9	23	90	0	70	50	2	0	47	1.13
5171--5224	27	2.0	26	82	10	65	50	1	0	48	1.11
5703--5760	28	2.1	27	84	6	73	32	5	1	60	1.29
7359--7394	14	2.6	14	86	0	54	30	13	2	52	1.55
11066--11094	14	2.0	15	93	6	51	75	0	24	0	0.80
14345--14411	36	1.9	35	84	6	91	32	11	23	31	1.91
16794--18451	113	14.8	112	86	2	2152	36	15	19	28	1.92
18242--18440	103	1.9	103	86	0	281	38	14	22	25	1.91
18793--18866	19	3.8	19	80	5	87	31	0	1	67	0.99
18799--18866	3	24.0	3	85	11	90	32	0	1	66	1.01
20503--20544	20	2.2	19	86	4	57	35	0	0	64	0.94
38267--38299	2	16.5	2	100	0	66	51	0	0	48	1.00
39730--39803	18	4.4	18	78	16	86	16	47	21	14	1.82
39752--39824	13	5.1	13	78	18	65	15	45	21	17	1.85
39731--39809	31	2.5	31	91	0	131	16	45	21	16	1.85
39785--39824	8	5.5	8	77	22	52	15	40	25	20	1.90
39785--39831	15	3.3	14	88	5	60	17	38	23	21	1.93
41121--41155	18	1.9	18	88	0	52	54	0	17	28	1.43
44919--44992	18	4.4	18	78	16	86	16	47	21	14	1.82
44941--45013	13	5.1	13	78	18	65	15	45	21	17	1.85
44920--44998	31	2.5	31	91	0	131	16	45	21	16	1.85
44974--45013	8	5.5	8	77	22	52	15	40	25	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44974--45020	15	3.3	14	88	5	60	17	38	23	21	1.93
46306--46340	18	1.9	18	88	0	52	54	0	17	28	1.43
55815--56104	55	5.3	54	78	5	235	28	21	17	33	1.95
59019--59054	13	2.7	13	91	4	54	41	5	11	41	1.64
64031--64094	30	2.1	30	85	5	85	39	7	12	40	1.72
65622--65665	22	2.0	21	83	12	54	50	2	4	43	1.35
66104--66143	21	1.9	21	94	0	71	57	0	10	32	1.32
67226--67273	23	2.2	22	85	7	62	31	10	0	58	1.32
67738--67767	15	2.0	15	93	0	51	40	3	20	36	1.69
75563--75597	18	1.9	18	94	0	61	42	5	22	28	1.76
77110--77140	13	2.4	13	94	0	53	51	0	0	48	1.00
77952--78026	32	2.4	31	84	8	98	33	33	22	10	1.89
83912--83957	20	2.3	19	85	14	58	50	8	15	26	1.73
95812--95876	31	2.1	31	83	16	82	32	23	12	32	1.91
99527--99568	2	21.0	2	100	0	84	50	0	0	50	1.00
107611--107645	18	1.9	18	100	0	70	34	17	8	40	1.80
108103--108225	23	5.3	23	80	4	115	37	23	14	24	1.92
108618--108643	2	13.0	2	100	0	52	50	50	0	0	1.00
113829--113924	23	4.1	24	81	10	119	35	23	18	21	1.96
114366--114421	2	28.0	2	100	0	112	50	50	0	0	1.00
114421--114497	2	38.0	2	97	2	145	49	1	0	49	1.09
114959--115008	21	2.5	20	87	9	66	32	26	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120151--120190	11	3.8	11	87	9	57	77	0	2	20	0.88
120142--120218	28	2.6	30	74	12	79	74	2	2	20	1.07
120129--120199	6	10.8	6	77	15	61	76	1	1	21	0.95
121803--121870	27	2.5	27	92	0	118	29	23	4	42	1.73
122454--122521	31	2.2	31	79	10	77	44	8	17	29	1.79
123681--123726	20	2.3	20	85	3	58	32	0	26	41	1.56

Tables:   1

The End!