Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002643.1 Hibiscus syriacus cultivar Beakdansim tig00005393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61031

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2913--2955
18
2.4
18
80
7
52
0
34
6
58
1.25
9273--9312
16
2.5
16
95
0
71
20
25
20
35
1.96
11729--11786
30
1.9
30
89
0
89
48
8
1
41
1.44
16270--16367
21
4.8
20
76
10
74
37
21
19
21
1.94
16335--16523
20
9.4
20
87
2
209
38
25
17
18
1.93
16915--16978
20
3.2
20
82
4
92
46
15
25
12
1.81
16913--16977
21
3.1
21
82
4
96
47
15
26
10
1.78
17003--17110
19
5.7
19
75
16
82
12
19
20
48
1.80
17049--17122
21
3.5
21
80
7
96
14
20
17
47
1.83
17202--17272
33
2.2
33
92
0
115
49
16
22
11
1.78
17651--17843
20
9.6
20
84
5
237
18
18
27
35
1.95
17837--17886
21
2.4
20
80
9
55
26
18
20
36
1.95
18202--18274
29
2.5
29
75
16
71
56
2
2
38
1.28
19148--19200
23
2.2
24
90
3
81
30
18
22
28
1.98
20163--20214
20
2.6
20
100
0
104
34
19
11
34
1.88
21641--21673
5
6.6
5
100
0
66
60
18
0
21
1.36
23395--23427
17
2.0
17
88
5
50
45
0
0
54
0.99
23844--23909
21
3.2
21
82
16
68
54
1
4
39
1.30
24881--24921
18
2.3
18
86
0
55
24
29
9
36
1.87
31332--31380
24
2.1
24
81
11
57
26
8
10
55
1.61
37371--37409
20
1.9
20
84
5
51
38
12
2
46
1.56
38183--38242
20
3.0
20
80
2
77
33
15
21
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42083--42121
17
2.3
17
100
0
78
41
5
17
35
1.72
44379--44478
18
5.0
21
71
21
81
28
27
22
23
1.99
44377--44478
39
2.6
40
85
1
143
28
26
21
23
1.99
45064--45168
45
2.3
46
81
4
115
29
16
21
32
1.95
46224--46377
32
4.8
32
82
1
175
32
19
14
33
1.92
46194--46377
64
2.9
64
80
1
217
33
18
14
33
1.91
48893--48926
17
2.0
17
88
11
52
52
2
0
44
1.16
50989--51049
26
2.3
27
88
2
88
50
16
11
21
1.76
52405--52690
43
6.7
43
85
2
297
19
22
24
33
1.97
52467--52690
85
2.6
85
85
3
288
19
20
25
33
1.96
52466--52697
128
1.8
128
85
1
331
19
20
25
34
1.96
56621--56848
74
3.1
73
81
6
244
41
11
13
33
1.81
57498--57721
106
2.1
107
83
7
287
36
15
11
37
1.83
59746--59810
28
2.3
29
92
7
116
23
18
27
30
1.97
59952--60013
31
2.0
30
87
3
88
38
16
14
30
1.88

Tables:   1

The End!