genome.fa.s2644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002644.1 Hibiscus syriacus cultivar Beakdansim tig00005394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75007

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293--377	40	2.2	39	87	10	120	42	14	9	34	1.77
2910--3020	39	2.8	39	100	0	222	49	8	12	29	1.69
3785--3828	15	2.7	18	73	23	51	59	4	0	36	1.18
19283--19319	17	2.2	17	90	9	58	24	2	5	67	1.25
27946--27970	10	2.5	10	100	0	50	40	0	0	60	0.97
28188--28264	2	39.5	2	94	5	140	51	0	0	48	1.00
28495--28532	2	19.0	2	100	0	76	50	0	0	50	1.00
29716--29766	3	17.0	3	95	0	93	31	0	1	66	1.03
30299--30354	24	2.2	24	84	6	67	50	1	0	48	1.11
31198--31528	173	1.9	172	88	3	495	39	7	17	34	1.79
31738--31777	20	2.0	20	85	0	53	57	2	0	40	1.12
31737--31795	22	2.8	21	71	21	52	52	3	0	44	1.17
31892--31999	51	2.1	53	82	3	130	48	2	1	47	1.27
31935--31999	28	2.3	27	82	12	78	50	3	1	44	1.26
32994--33057	18	3.6	18	91	0	110	18	50	15	15	1.79
33033--33070	13	2.9	13	88	0	58	18	47	18	15	1.83
33016--33096	31	2.6	31	88	0	117	17	45	19	17	1.85
32994--33102	18	6.2	18	79	13	102	17	46	18	17	1.84
33069--33093	13	1.9	13	100	0	50	16	40	24	20	1.91
33083--33129	10	5.5	8	82	14	51	14	34	25	25	1.94
33086--33119	15	2.1	16	89	10	52	11	35	26	26	1.91
34399--34433	18	1.9	18	88	0	52	54	0	17	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40029--40062	18	1.9	18	94	5	61	29	17	0	52	1.45
41065--41117	28	1.9	27	81	11	63	37	16	24	20	1.93
47239--47288	20	2.5	20	83	6	66	34	12	10	44	1.75
47403--47533	61	2.2	59	87	2	181	38	7	7	45	1.61
48248--48338	39	2.4	38	89	5	132	40	6	16	36	1.75
48336--48665	77	4.2	76	76	9	263	35	17	10	36	1.84
50655--50932	41	6.8	41	83	8	332	30	8	24	36	1.85
50798--50856	18	3.3	18	65	25	52	25	8	30	35	1.86
50838--50940	46	2.2	46	94	0	179	32	5	27	34	1.81
50650--50932	123	2.3	122	84	6	367	30	8	24	36	1.85
52229--52259	14	2.2	14	100	0	62	51	6	0	41	1.27
52579--52637	24	2.7	21	82	10	66	30	22	22	25	1.99
53794--53828	18	1.9	18	88	0	52	20	17	34	28	1.95
55760--56127	182	2.0	182	92	2	605	42	3	7	47	1.48
56853--56884	5	6.6	5	92	7	57	59	0	40	0	0.97
56855--56884	9	3.2	9	95	4	51	60	0	40	0	0.97
59365--59422	13	4.5	13	86	0	80	74	1	1	22	1.01
60703--60735	4	8.8	4	87	12	52	78	0	0	21	0.75
60684--60731	18	2.7	18	87	3	62	83	0	4	12	0.79
60690--60736	22	2.2	21	88	3	67	82	0	2	14	0.75
60872--61249	37	10.2	36	88	6	487	44	7	2	44	1.46
60872--61249	75	5.1	70	88	6	472	44	7	2	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61213--61274	25	2.5	25	94	0	115	41	8	3	46	1.49
61179--61312	62	2.1	62	86	6	182	41	8	3	47	1.51
68449--68652	20	10.2	20	70	14	109	39	25	19	15	1.91
68511--68645	20	6.8	20	80	17	156	34	28	19	17	1.94
68446--68604	62	2.6	62	83	6	193	38	27	19	14	1.90
68511--68643	58	2.2	60	92	5	216	35	28	19	16	1.94
68748--68803	6	9.5	6	98	1	105	32	51	16	0	1.44
69288--69351	6	11.5	6	98	1	93	0	17	54	28	1.43
69447--69734	20	14.2	20	74	15	211	16	19	22	40	1.90
69447--69631	60	3.0	61	87	4	250	17	20	23	38	1.93
70942--70989	22	2.2	22	85	7	62	81	2	4	12	0.93
71043--71071	2	15.0	2	92	7	51	48	0	0	51	1.00
71135--71433	36	7.9	35	80	14	269	43	8	3	44	1.50
71268--71490	37	5.9	37	85	5	277	41	8	4	45	1.55
71268--71490	75	2.9	74	86	5	295	41	8	4	45	1.55
71970--71999	15	2.0	15	100	0	60	60	0	20	20	1.37
71973--72007	15	2.3	15	90	0	52	65	0	17	17	1.27
72113--72192	21	3.8	20	72	24	60	77	1	5	16	1.01
72118--72196	42	1.9	41	81	2	95	78	1	3	16	0.96
72086--72196	28	4.2	26	72	15	68	78	0	5	15	0.98
72082--72200	38	3.2	38	76	11	111	76	0	6	15	1.04
72117--72218	38	2.7	38	83	8	111	72	0	3	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72254--72322	24	2.9	24	76	8	77	66	4	4	24	1.28
72634--72734	36	2.9	36	85	10	145	28	13	12	44	1.81
72641--72733	34	2.7	33	90	6	132	30	12	12	44	1.80
73272--73774	104	4.9	105	90	3	758	22	17	26	32	1.97
74377--74785	36	11.7	36	75	13	293	39	12	20	28	1.88
74389--74473	37	2.3	36	89	2	125	41	17	18	22	1.91
74635--74703	22	3.5	22	68	25	71	42	11	17	28	1.84
74511--74709	73	2.8	71	88	4	292	40	11	20	28	1.86

Tables:   1

The End!