Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002645.1 Hibiscus syriacus cultivar Beakdansim tig00005396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53765

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--173
44
3.7
45
80
5
165
30
11
19
39
1.86
1--196
44
4.5
44
79
5
148
29
10
22
37
1.88
4347--4385
20
2.0
20
84
0
51
51
23
0
25
1.49
4878--5099
85
2.6
85
76
7
191
29
18
18
33
1.95
4986--5156
85
2.1
81
83
6
218
26
18
19
35
1.95
5011--5200
85
2.3
84
79
6
183
30
17
20
32
1.95
6693--7079
195
2.0
195
82
2
472
25
19
17
38
1.93
8666--8911
121
2.0
121
100
0
492
32
8
9
50
1.65
15542--16038
136
3.7
136
89
0
721
31
17
22
28
1.96
16956--17006
22
2.3
24
80
16
65
9
11
35
43
1.75
17050--17096
3
16.3
3
82
8
53
57
0
0
42
0.98
23138--23447
49
6.4
48
85
6
365
29
20
13
35
1.92
23755--23801
17
2.8
17
90
6
69
34
19
0
46
1.50
25056--25117
32
1.9
32
84
12
83
25
0
11
62
1.28
25093--25220
65
2.0
66
86
6
181
31
0
13
54
1.44
25803--25835
4
8.0
4
93
6
57
24
0
0
75
0.80
31194--31255
32
1.9
32
87
12
92
29
0
9
61
1.28
31236--31356
63
1.9
63
85
6
165
31
0
13
55
1.38
31938--31970
4
8.0
4
93
6
57
24
0
0
75
0.80
32042--32084
16
2.8
15
75
6
50
23
2
0
74
0.93
34658--34999
49
6.9
48
86
5
371
31
21
12
34
1.91
34673--34999
148
2.2
148
86
3
435
32
21
12
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34673--34999
99
3.3
98
85
6
410
32
21
12
34
1.90
37796--37894
20
4.9
20
87
8
148
26
26
10
37
1.88
38286--38319
11
3.0
11
87
8
50
70
2
2
23
1.15
41470--41591
40
3.1
40
80
3
151
22
19
27
30
1.98
50015--50114
37
2.8
36
89
6
114
16
22
5
57
1.58
50035--50114
37
2.2
37
97
0
151
16
21
5
57
1.58

Tables:   1

The End!