genome.fa.s2646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002646.1 Hibiscus syriacus cultivar Beakdansim tig00005401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155397

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718--3796	9	9.8	8	79	16	76	74	0	13	11	1.07
3718--3796	16	4.9	16	75	21	76	74	0	13	11	1.07
3715--3841	8	15.8	8	73	16	59	77	0	11	9	1.02
5105--5381	55	5.1	55	88	4	420	29	14	28	27	1.95
5105--6054	156	6.0	158	88	5	479	28	15	27	28	1.96
5377--6082	52	13.6	52	94	0	1238	28	16	26	29	1.97
5662--5794	24	5.2	24	62	13	68	29	14	28	27	1.95
6341--6372	3	11.3	3	87	12	50	34	0	0	65	0.93
6343--6372	11	2.7	11	94	0	51	33	0	0	66	0.92
7042--7096	20	2.8	20	91	5	76	25	30	12	30	1.93
9471--9501	10	3.2	10	90	9	55	58	0	0	41	0.98
13901--13941	21	2.0	21	85	9	57	58	4	0	36	1.20
13953--14004	22	2.5	20	74	20	52	50	1	3	44	1.31
14224--14256	14	2.4	14	100	0	66	24	12	48	15	1.78
21877--22128	60	4.2	60	74	12	198	41	5	18	34	1.73
21998--22073	29	2.6	29	76	0	89	47	2	17	32	1.61
29431--29484	24	2.4	22	79	11	63	11	22	1	64	1.35
31239--31432	56	3.5	55	87	2	271	28	21	17	32	1.96
31239--31449	112	1.9	113	86	3	300	29	20	16	32	1.95
35804--35856	23	2.3	22	84	12	63	30	15	28	26	1.96
42168--42219	23	2.3	23	86	0	68	38	23	9	28	1.86
42310--42387	20	3.9	20	75	0	84	56	16	10	16	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46576--46604	14	2.1	14	100	0	58	13	6	20	58	1.58
46873--46945	7	11.6	7	75	16	63	36	10	0	52	1.37
46842--46949	23	4.3	24	82	13	121	37	9	0	52	1.33
46842--46951	27	4.3	25	78	17	111	38	9	0	52	1.33
46842--46985	23	5.7	26	78	16	119	40	8	0	50	1.38
46862--46957	25	3.9	24	77	15	99	38	8	0	53	1.31
47243--47321	22	3.6	22	94	0	131	34	15	13	36	1.87
48321--48361	22	1.9	21	90	5	64	70	4	0	24	1.06
50820--50897	32	2.4	33	72	8	79	53	2	12	30	1.52
52699--52890	60	3.2	60	72	14	216	16	21	28	33	1.95
52759--52948	58	3.2	58	74	14	217	16	24	28	31	1.96
52696--52950	118	2.2	118	97	0	483	16	22	28	32	1.96
52696--53008	118	2.7	118	88	2	342	17	21	27	33	1.96
55249--55305	27	2.1	27	100	0	114	47	12	24	15	1.80
56718--56756	3	13.0	3	94	0	69	64	0	2	33	1.08
57310--57367	29	2.1	29	90	6	93	77	1	13	6	1.05
57987--58044	31	1.9	30	82	10	73	13	8	18	58	1.61
63995--64051	28	2.0	28	100	0	114	35	14	24	26	1.93
67525--67616	42	2.2	42	88	0	130	27	17	20	34	1.95
67545--67615	22	3.3	22	66	15	58	28	14	19	38	1.91
67575--67760	93	2.0	93	87	8	272	35	15	18	30	1.92
68214--68580	53	7.0	53	83	3	429	29	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88776--88809	13	2.5	14	90	9	61	5	55	32	5	1.48
94802--94848	24	2.0	24	86	0	67	70	0	0	29	0.88
94807--94853	9	5.1	9	78	14	51	65	0	0	34	0.93
94800--94862	28	2.3	25	84	15	72	71	1	0	26	0.95
95645--95861	36	6.2	35	82	11	259	45	4	5	44	1.49
95645--95861	71	3.1	70	81	15	270	45	4	5	44	1.49
95806--95916	57	1.9	55	83	7	141	43	2	7	46	1.45
95872--95941	34	2.1	34	83	5	88	42	0	10	47	1.37
95973--96033	24	2.5	24	82	12	81	32	0	0	67	0.91
95975--96033	26	2.5	24	78	13	68	32	0	0	67	0.91
95979--96029	21	2.3	23	81	18	63	33	0	0	66	0.92
99241--99309	30	2.3	30	82	5	77	17	15	8	57	1.62
99256--99325	30	2.3	30	82	0	77	20	12	8	58	1.60
104163--104449	156	1.8	156	85	1	405	38	18	12	30	1.88
104354--104564	57	3.6	57	79	9	187	41	19	11	26	1.86
104414--104564	60	2.6	60	86	3	200	41	21	11	25	1.87
104679--105037	85	4.2	84	82	1	403	36	18	16	27	1.93
106978--107047	30	2.3	30	82	0	77	20	12	8	58	1.60
107049--107089	21	2.0	21	85	9	57	19	4	0	75	0.98
109455--110039	85	6.9	85	86	2	762	35	20	17	27	1.95
110815--111090	36	7.5	36	87	6	374	46	3	5	44	1.42
110815--111090	74	3.7	74	87	5	382	46	3	5	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111125--111158	15	2.2	16	89	5	52	32	0	0	67	0.91
112437--112522	26	3.5	23	71	22	59	12	5	2	79	1.01
112445--112482	16	2.3	16	90	4	58	13	5	0	81	0.85
112456--112571	6	18.8	6	70	19	53	13	4	4	77	1.07
112438--112517	9	8.2	9	76	17	56	12	5	2	80	0.98
112462--112527	33	2.0	34	88	8	100	10	4	4	80	1.00
112473--112545	33	2.2	33	80	11	87	13	4	5	76	1.11
112502--112607	54	2.0	53	80	12	119	17	3	4	73	1.16
139383--139423	14	2.9	14	86	10	57	34	7	24	34	1.83
140488--140557	29	2.4	29	83	7	79	55	4	0	40	1.19
140856--140912	2	29.0	2	96	3	107	49	0	0	50	1.00
142512--142559	23	2.1	23	100	0	96	45	4	0	50	1.21
143098--143165	23	3.0	23	83	8	86	52	7	22	17	1.69
146146--146181	2	18.0	2	100	0	72	50	0	0	50	1.00
148011--148083	22	3.3	22	90	1	101	24	16	20	38	1.93
153213--153285	22	3.3	22	88	1	110	26	19	20	34	1.96

Tables:   1

The End!