Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002648.1 Hibiscus syriacus cultivar Beakdansim tig00005411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  636717

Tables:   1   2   3   4   

This is table  4  of  4  ( 408 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581632--581674
19
2.3
19
100
0
86
16
37
4
41
1.69
584753--584804
24
2.2
24
85
0
68
5
30
13
50
1.65
588675--588719
17
2.6
17
85
0
72
28
20
22
28
1.98
589442--589480
11
3.4
11
80
13
51
43
0
5
51
1.24
590094--590153
30
2.0
30
90
6
95
31
21
3
43
1.69
593197--593267
29
2.5
28
73
13
65
74
1
7
16
1.10
593222--593263
19
2.3
19
91
4
68
78
2
2
16
0.96
593248--593304
7
7.9
7
82
5
51
77
0
3
19
0.92
594039--594195
83
1.9
84
81
5
192
25
21
21
31
1.98
594586--594754
83
2.0
83
81
2
196
28
18
17
35
1.94
599785--599837
25
2.1
25
89
6
81
69
1
7
20
1.22
599802--599873
25
2.8
25
77
10
65
70
0
13
15
1.16
599885--599917
16
2.1
16
88
11
50
75
3
3
18
1.06
599909--599979
32
2.3
30
80
7
72
76
1
8
14
1.09
601154--601202
22
2.2
23
78
10
57
71
0
6
22
1.08
601166--601212
22
2.1
22
92
7
78
72
0
0
27
0.85
601252--601327
37
2.1
37
87
0
107
47
6
3
42
1.48
601351--601409
11
5.1
11
75
18
57
45
6
0
47
1.29
601300--601655
36
9.6
37
82
9
422
45
6
1
45
1.41
601313--601488
12
14.5
12
65
19
55
45
6
1
47
1.35
602247--602824
259
2.3
251
86
9
793
41
19
11
27
1.86
604096--604142
21
2.3
21
78
14
53
25
17
23
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
606674--606751
41
1.9
41
83
0
102
42
15
14
28
1.85
607925--607980
29
1.9
29
85
0
76
25
8
23
42
1.82
608483--608530
23
2.0
24
84
4
62
25
4
4
66
1.27
608523--608588
28
2.4
28
89
0
96
42
9
7
40
1.65
612426--612455
8
3.8
8
100
0
60
53
0
36
10
1.35
616216--616253
19
2.0
20
84
5
51
18
23
2
55
1.55
624980--625018
4
9.5
4
83
5
51
23
0
2
74
0.94
624979--625027
25
2.0
25
84
8
64
26
0
2
71
0.97
625026--625103
12
6.7
12
72
15
56
43
3
12
39
1.61
625072--625106
12
2.9
12
95
0
61
48
5
8
37
1.58
625088--625229
40
3.7
40
82
7
184
44
3
7
45
1.48
625109--625257
38
4.1
36
76
17
157
42
2
7
46
1.45
625088--625259
76
2.4
71
90
6
256
44
3
6
45
1.47
625185--625286
30
3.2
31
89
9
136
44
3
7
44
1.51
625253--625314
27
2.3
26
81
5
70
50
3
4
41
1.40
625281--625359
33
2.3
33
89
4
113
46
0
3
49
1.19
631623--632663
165
6.3
165
91
1
1503
29
25
21
24
1.99
631623--632660
495
2.1
495
91
0
1693
28
25
21
24
1.99
633233--633279
21
2.2
21
77
7
51
27
0
2
70
0.99
633277--633354
12
6.7
12
72
15
56
43
3
12
39
1.61
633323--633357
12
2.9
12
95
0
61
48
5
8
37
1.58
633339--633470
38
3.4
40
81
8
182
43
4
6
44
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
633360--633513
38
4.1
36
80
11
168
44
3
6
46
1.45
633339--633495
76
2.0
78
96
2
291
45
4
6
43
1.49
633472--633543
29
2.3
31
86
9
94
47
4
5
43
1.46
633538--633610
30
2.4
31
86
11
105
46
0
4
49
1.21

Tables:   1   2   3   4

The End!