genome.fa.s2649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002649.1 Hibiscus syriacus cultivar Beakdansim tig00005415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92033

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2887--2929	20	2.2	20	86	0	59	37	16	11	34	1.85
12039--12088	16	2.9	16	75	16	55	24	18	22	36	1.95
12250--12341	23	4.0	23	75	0	94	19	20	23	35	1.95
17805--18092	108	2.7	109	86	1	400	42	18	18	21	1.89
19009--19065	6	9.2	6	83	7	51	56	1	0	42	1.10
19003--19057	25	2.2	24	81	9	65	58	1	0	40	1.09
19020--19058	19	2.1	19	100	0	78	51	0	0	48	1.00
26771--26805	18	1.9	18	88	0	52	25	22	11	40	1.88
28183--28254	30	2.4	30	85	2	90	38	6	15	38	1.74
28205--28263	30	2.0	30	89	0	91	35	6	20	37	1.79
29342--29376	16	2.1	17	89	5	54	17	5	11	65	1.43
31092--31128	20	1.9	19	89	10	58	45	10	24	18	1.81
37514--37640	44	2.9	44	86	2	184	22	17	5	55	1.62
37618--37658	14	2.9	14	88	3	55	24	14	4	56	1.58
38055--38204	79	1.9	79	95	0	273	37	16	20	26	1.93
39031--39077	22	2.1	22	100	0	94	31	14	17	36	1.90
40130--40187	27	2.1	27	93	0	98	18	24	24	32	1.97
40137--40203	27	2.5	27	87	2	91	19	20	22	37	1.95
44186--44215	13	2.2	14	94	5	53	33	0	6	60	1.23
46479--46537	24	2.3	27	80	16	63	55	3	0	40	1.16
46828--46874	23	2.0	23	87	0	67	14	14	14	55	1.70
54074--54139	23	2.9	23	71	20	57	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54182--54211	15	1.9	16	93	6	53	63	0	0	36	0.95
56585--56625	17	2.4	17	100	0	82	17	41	4	36	1.71
61649--61715	35	1.9	35	90	6	109	26	5	17	49	1.70
62310--62495	74	2.5	75	79	11	202	50	13	6	29	1.67
62420--62448	12	2.5	12	94	5	51	62	10	0	27	1.28
64720--64768	22	2.2	23	85	3	64	61	4	22	12	1.48
69843--69941	9	10.3	9	77	12	81	17	27	26	29	1.97
69843--69941	29	3.4	29	82	8	112	17	27	26	29	1.97
69842--69939	19	5.1	19	79	13	92	18	25	26	29	1.98
69937--69997	17	3.3	17	77	20	68	18	45	22	13	1.83
69938--69988	22	2.3	22	100	0	102	19	49	23	7	1.74
72103--72324	82	2.7	81	78	8	218	31	16	21	31	1.95
82025--82071	13	3.6	13	91	0	76	34	12	6	46	1.67
82532--82587	28	1.9	29	82	13	71	17	1	21	58	1.47
89327--89368	19	2.2	20	82	4	50	16	0	14	69	1.20
89385--89432	13	3.6	13	83	5	60	35	14	4	45	1.64
89876--89957	27	2.9	30	74	20	77	17	1	23	58	1.45

Tables:   1

The End!