genome.fa.s265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000265.1 Hibiscus syriacus cultivar Beakdansim tig00000488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159973

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6848--6874	4	6.8	4	100	0	54	25	0	0	74	0.83
7188--7242	21	2.6	21	75	18	51	27	1	9	61	1.36
7202--7242	21	1.9	21	85	14	57	26	0	9	63	1.25
10630--10712	26	3.2	25	67	14	69	38	3	9	48	1.54
13756--13793	15	2.5	16	87	8	53	52	0	0	47	1.00
13747--13780	15	2.1	17	89	10	54	50	0	0	50	1.00
14887--14950	30	2.1	30	85	0	83	35	7	18	37	1.80
14901--14957	30	2.0	28	86	10	80	36	7	21	35	1.80
25378--25465	24	3.7	23	77	11	88	19	13	19	47	1.82
25406--25470	12	5.4	12	76	7	69	13	13	18	53	1.72
25364--25472	48	2.3	49	84	6	143	18	14	18	48	1.81
26573--26612	19	2.1	19	100	0	80	32	15	17	35	1.91
27364--27397	9	3.7	9	88	4	50	14	23	29	32	1.94
27410--27456	13	3.8	13	81	16	64	17	48	19	14	1.81
27465--27539	29	2.6	29	84	0	87	22	8	26	42	1.81
35500--35541	3	14.0	3	100	0	84	33	0	0	66	0.92
36544--36579	18	2.0	18	88	0	54	52	0	16	30	1.44
37717--37811	24	4.0	24	79	5	102	20	13	17	48	1.81
37748--37809	12	5.2	12	78	7	72	12	14	19	53	1.73
37703--37811	48	2.3	49	82	6	125	19	15	17	47	1.82
40188--40235	3	16.0	3	100	0	96	33	0	0	66	0.92
41243--41278	18	2.0	18	88	0	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42419--42513	24	4.0	24	79	5	102	20	13	17	48	1.81
42450--42511	12	5.2	12	78	7	72	12	14	19	53	1.73
42422--42513	48	1.9	48	84	4	123	19	14	17	48	1.80
42671--42695	2	12.5	2	100	0	50	48	0	0	52	1.00
44904--44981	3	26.0	3	100	0	156	33	0	0	66	0.92
45990--46025	18	2.0	18	88	0	54	52	0	16	30	1.44
47153--47261	24	4.5	25	72	12	93	19	14	17	48	1.81
47153--47261	48	2.3	48	83	3	130	19	14	17	48	1.81
48189--48237	10	4.8	11	78	16	61	16	18	26	38	1.91
48190--48244	9	5.6	10	79	12	69	14	20	29	36	1.92
48257--48303	13	3.8	13	81	16	64	17	48	19	14	1.81
51383--51533	36	4.2	36	89	5	236	37	11	16	34	1.84
54868--54897	15	1.9	16	93	6	53	53	6	0	40	1.27
60007--60139	35	3.8	35	81	2	176	21	21	18	39	1.93
60007--60150	71	2.0	71	90	0	225	20	22	17	40	1.91
61106--61132	14	1.9	14	100	0	54	66	3	29	0	1.09
64869--64896	14	2.0	14	100	0	56	28	21	21	28	1.99
68204--68252	21	2.3	21	85	0	71	18	26	32	22	1.97
71527--71566	3	13.3	3	94	0	71	0	35	0	65	0.93
80086--80165	30	2.6	30	84	5	99	28	26	12	32	1.93
82049--82151	50	2.1	50	89	7	156	33	7	9	48	1.65
82971--83022	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83011--83118	20	5.3	20	81	6	101	33	25	16	25	1.96
83073--83125	20	2.7	20	82	11	72	26	26	18	28	1.98
83606--83664	20	3.0	20	87	0	73	16	18	22	42	1.89
84983--85027	18	2.5	18	92	0	81	28	44	13	13	1.81
85393--85586	99	2.0	99	98	0	379	20	11	17	51	1.75
85608--85663	20	2.8	20	81	2	60	37	21	23	17	1.94
85663--85720	14	3.9	14	77	16	62	48	22	17	12	1.80
85647--85737	32	2.8	33	91	3	148	47	19	18	14	1.83
85677--85742	19	3.8	19	71	22	72	46	21	19	12	1.82
85754--85843	14	5.9	14	76	19	90	11	17	23	47	1.79
85749--85859	32	3.4	32	97	1	204	11	18	22	46	1.81
85844--85899	20	2.8	19	84	7	76	17	25	21	35	1.95
87769--87802	14	2.4	14	90	0	50	32	0	20	47	1.51
87938--87987	19	2.9	18	75	24	63	50	18	20	12	1.78
87994--88097	40	2.9	34	72	15	91	17	21	20	41	1.90
88015--88081	20	3.3	20	73	8	73	17	20	20	40	1.92
88619--88652	12	2.9	12	86	4	52	17	41	5	35	1.74
89207--89260	24	2.2	24	86	0	72	24	16	18	40	1.90
89435--89459	12	2.1	12	100	0	50	72	0	28	0	0.86
91750--91880	19	7.7	18	65	25	79	43	19	22	13	1.87
91750--91876	33	3.8	33	87	4	193	43	19	22	14	1.87
91751--91883	66	2.0	66	95	0	239	42	19	22	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91876--91917	19	2.2	19	91	0	66	16	19	23	40	1.91
91885--91951	19	3.8	19	75	18	81	11	22	20	44	1.84
92058--92094	14	2.6	14	91	0	65	45	24	0	29	1.53
93465--93630	21	7.9	21	64	7	77	22	19	35	21	1.96
93451--93653	42	4.8	41	76	9	176	22	18	36	22	1.95
93481--93656	84	2.1	84	97	0	334	23	17	37	21	1.94
93875--94059	91	2.0	90	91	6	300	47	17	12	22	1.81
95746--95858	19	6.1	19	78	13	101	42	20	23	13	1.87
95854--95901	20	2.5	19	77	12	53	10	16	27	45	1.80
96419--96471	20	2.7	20	93	0	88	26	20	28	24	1.99
96480--96533	20	2.7	20	97	0	99	25	18	24	31	1.97
96420--96536	61	1.9	61	85	0	162	23	17	24	33	1.97
96420--96554	61	2.2	61	81	2	155	22	20	24	32	1.98
101947--101980	17	1.9	18	88	5	52	26	0	8	64	1.22
102012--102059	20	2.6	18	83	12	53	54	0	2	43	1.12
103571--103601	16	2.0	15	93	6	53	58	0	9	32	1.31
112641--112683	20	2.2	20	86	0	59	34	18	13	32	1.90
116822--116859	17	2.2	17	90	0	58	39	0	0	60	0.97
127690--127740	26	2.0	24	81	7	57	33	17	3	45	1.67
129517--129547	14	2.2	14	94	0	53	35	0	0	64	0.94
135578--135627	20	2.5	20	96	0	91	46	16	6	32	1.71
137335--137408	33	2.2	33	85	0	94	29	9	21	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137361--137433	31	2.3	33	88	4	105	27	15	23	34	1.94
141380--141478	33	3.1	32	82	5	119	26	10	23	40	1.86
144487--144524	16	2.4	16	95	0	67	28	0	5	65	1.14
150867--150905	19	2.0	20	90	5	62	64	2	0	33	1.08
150883--150920	16	2.3	17	86	4	51	68	0	0	31	0.90
150878--150920	16	2.6	16	81	7	50	69	0	0	30	0.88
153615--153688	3	25.0	3	83	5	80	62	2	0	35	1.10
154351--154397	4	12.0	4	95	4	87	74	0	0	25	0.82
154885--154913	2	14.5	2	100	0	58	51	0	0	48	1.00
158392--158433	20	2.1	20	100	0	84	40	14	19	26	1.89
158880--158937	13	4.4	13	72	10	55	60	1	0	37	1.07
158892--158941	26	1.9	26	88	8	75	62	4	0	34	1.14

Tables:   1

The End!