Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002650.1 Hibiscus syriacus cultivar Beakdansim tig00005416_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65787

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3710--3760
16
3.3
16
75
5
52
47
9
13
29
1.75
3710--3791
32
2.6
31
82
3
85
46
12
14
26
1.80
12036--12081
20
2.3
20
92
7
76
41
8
15
34
1.78
13851--13960
53
2.1
53
92
0
184
35
17
19
28
1.94
22020--22065
20
2.3
20
92
7
76
34
6
19
39
1.78
24494--25157
182
3.6
182
87
3
917
45
13
13
27
1.81
34295--35225
200
4.7
199
89
0
1317
41
12
15
31
1.83
36657--36690
12
2.8
12
86
0
50
52
2
32
11
1.53
38126--38192
12
5.6
12
80
0
71
35
1
11
50
1.48
38126--38204
6
13.2
6
78
0
59
37
2
10
49
1.50
38126--38204
24
3.3
24
90
0
122
37
2
10
49
1.50
38140--38196
18
3.2
18
84
0
69
36
3
10
49
1.55
40645--41011
38
9.9
38
79
13
265
41
2
7
48
1.44
40647--41010
36
9.9
35
76
12
222
42
2
7
48
1.44
40645--41034
37
10.5
38
79
9
339
41
2
7
48
1.44
40731--41034
75
4.1
73
81
8
317
41
2
7
48
1.45
41050--41105
4
13.8
4
81
10
69
25
5
0
69
1.09
41046--41105
25
2.5
24
81
10
77
25
5
0
70
1.08
41261--41290
16
1.9
15
93
6
51
20
40
26
13
1.89
42189--42214
2
13.0
2
100
0
52
50
0
0
50
1.00
43598--43630
16
2.2
16
89
10
52
21
21
30
27
1.98
44370--44452
16
5.3
16
69
11
55
9
15
28
45
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48892--49082
29
6.6
29
70
11
106
31
4
15
47
1.66
50012--50298
117
2.5
117
91
2
454
17
14
34
33
1.90
50021--50335
117
2.7
117
86
4
325
21
13
33
32
1.91
56352--56540
29
6.6
29
74
6
118
32
4
16
47
1.66
57478--57886
117
3.5
117
94
0
694
17
14
34
32
1.91
59229--59285
24
2.4
23
76
2
60
43
21
14
21
1.87

Tables:   1

The End!