genome.fa.s2651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002651.1 Hibiscus syriacus cultivar Beakdansim tig00005423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108214

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772--1907	71	1.9	71	89	1	211	27	19	18	33	1.96
1791--1902	35	3.2	34	73	10	109	27	17	19	34	1.95
3288--3349	2	31.0	2	100	0	124	0	50	0	50	1.00
4455--4507	22	2.4	22	100	0	106	45	11	3	39	1.58
16610--16662	17	3.1	17	86	0	70	35	15	7	41	1.75
20637--20700	17	3.7	17	80	14	69	34	14	9	42	1.77
20639--20710	17	4.2	16	77	8	54	34	13	9	41	1.78
25369--25412	19	2.3	19	88	7	63	31	20	29	18	1.96
26529--26568	10	3.8	10	81	12	53	12	17	20	50	1.78
26566--26599	10	3.4	10	91	0	59	17	14	11	55	1.68
26586--26612	14	1.9	14	100	0	54	14	11	14	59	1.62
26884--26939	10	4.8	13	69	24	52	10	8	19	60	1.55
26897--26960	10	6.1	10	78	10	74	10	10	18	59	1.60
26884--26960	23	3.5	22	82	7	95	10	10	19	59	1.58
29563--29606	18	2.5	18	78	14	56	65	4	0	29	1.12
31472--31540	15	3.7	19	75	16	58	24	30	24	20	1.99
31510--31542	15	2.2	15	100	0	66	27	33	24	15	1.95
38371--38401	15	2.1	15	93	0	53	29	35	22	12	1.91
41128--41180	26	2.0	26	82	7	63	20	3	24	50	1.64
52703--52864	29	5.6	29	85	6	177	44	16	4	34	1.69
57338--57698	180	2.0	181	99	0	715	30	24	19	24	1.98
60218--60405	58	3.3	57	84	4	234	46	15	5	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60221--60412	29	6.7	29	78	7	180	44	16	6	33	1.72
61379--61424	25	2.0	24	83	12	60	56	0	0	43	0.99
62410--62438	12	2.3	13	94	5	51	0	10	6	82	0.83
62828--62933	3	34.7	3	84	7	133	61	0	1	36	1.07
73048--73119	32	2.3	31	97	2	135	58	0	0	41	0.98
73922--74010	46	1.9	46	88	0	133	46	12	28	13	1.79
76749--76776	12	2.3	12	100	0	56	7	53	7	32	1.55
81539--81571	12	2.8	12	90	0	57	51	0	24	24	1.48
81955--81984	12	2.5	12	94	0	51	6	50	6	36	1.55
85906--85954	26	2.0	24	92	8	80	57	10	8	24	1.59
88259--88319	23	2.7	23	92	0	95	22	19	21	36	1.95
92117--92173	16	3.6	16	79	13	55	73	5	3	17	1.16
92132--92175	22	2.0	22	82	8	54	72	6	2	18	1.17
93713--93961	92	2.7	93	81	1	259	31	15	21	31	1.95
93901--94032	59	2.3	59	81	6	144	34	15	20	29	1.94
94062--94356	39	7.5	39	82	4	324	36	14	16	32	1.89
94062--94349	83	3.6	82	83	6	310	37	14	15	32	1.89
94062--94356	78	3.7	78	83	5	360	36	14	16	32	1.89
94885--94971	41	2.1	42	86	2	122	32	19	20	27	1.97
95049--95483	52	7.8	56	75	11	353	40	17	10	31	1.84
95051--95472	111	3.8	111	84	5	577	40	18	10	30	1.85
100160--100202	16	2.6	16	88	3	59	74	6	2	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100161--100204	22	2.0	22	86	8	63	75	6	2	15	1.12
101017--101053	19	2.0	20	89	10	60	64	10	10	13	1.49
103146--104330	538	2.2	538	91	3	1930	27	16	13	42	1.86
103146--104331	180	6.6	182	92	3	1900	27	16	13	41	1.86

Tables:   1

The End!