Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002652.1 Hibiscus syriacus cultivar Beakdansim tig00005424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65997
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:525 original size:74 final size:74
Alignment explanation
Indices: 401--538 Score: 190
Period size: 74 Copynumber: 1.9 Consensus size: 74
391 GTTATATGAC
* * *
401 TAGGGGTATCGATACCTCTAAGGGGGTATCGATACCCATATGACATTCTATTTTTCTCGGAGCCA
1 TAGGGGTATCGATACCTCTAAGGGGGTATCGATACCCATAGGACAATCTATTTTTCTCGAAGCCA
466 AATCTTGCA
66 AATCTTGCA
* * *
475 TAGGGGTATCGGTACC-CTAAGAGGGGTATCGATATCCACT-GGGCAATCTATTTTTCTCGAAGC
1 TAGGGGTATCGATACCTCTAAG-GGGGTATCGATACCCA-TAGGACAATCTATTTTTCTCGAAGC
538 C
64 C
539 CTTCTATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
73 5 0.09
74 50 0.89
75 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (74 bp):
TAGGGGTATCGATACCTCTAAGGGGGTATCGATACCCATAGGACAATCTATTTTTCTCGAAGCCA
AATCTTGCA
Found at i:3749 original size:24 final size:24
Alignment explanation
Indices: 3720--3782 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
3710 GATTATAACC
3720 TTTTAAAGTTTCAAATTATACTAA
1 TTTTAAAGTTTCAAATTATACTAA
3744 TTTTAAAGTTTCAAATTATACTAA
1 TTTTAAAGTTTCAAATTATACTAA
3768 TTTTAAAGTTTCAAA
1 TTTTAAAGTTTCAAA
3783 CATCAAAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (24 bp):
TTTTAAAGTTTCAAATTATACTAA
Found at i:4903 original size:5 final size:5
Alignment explanation
Indices: 4888--4922 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
4878 ATTTTCGGTC
4888 GAAGTA GAAGA GAAGA GAAGA GAAGA GAAGA GAAG
1 GAAG-A GAAGA GAAGA GAAGA GAAGA GAAGA GAAG
4923 GGAGTTGAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.03
Consensus pattern (5 bp):
GAAGA
Found at i:5727 original size:34 final size:35
Alignment explanation
Indices: 5647--5816 Score: 133
Period size: 35 Copynumber: 4.9 Consensus size: 35
5637 TTTTCTAACT
5647 TACTAACATT-CTAAC--TTTTA-TTTTATTGTTCA
1 TACTAAC-TTACTAACTTTTTTATTTTTATTGTTCA
* *
5679 TACTAACTTTCTAACTTTTTTATTTTTATTGTTCT
1 TACTAACTTACTAACTTTTTTATTTTTATTGTTCA
*
5714 TACTGA-TTACTAACATTCTAACTTT-TATTTTATTGTTCA
1 TACTAACTTACTAAC-TT-T---TTTAT-TTTTATTGTTCA
* * *
5753 TACTAACATACTGACATTTTTATTTTTATTGTTC-
1 TACTAACTTACTAACTTTTTTATTTTTATTGTTCA
* *
5787 TCACTAACTCACTAAC-ATTTTA-TTTTATTG
1 T-ACTAACTTACTAACTTTTTTATTTTTATTG
5817 CACAAACTAA
Statistics
Matches: 113, Mismatches: 12, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
31 2 0.02
32 12 0.11
33 8 0.07
34 18 0.16
35 43 0.38
36 2 0.02
38 2 0.02
39 20 0.18
40 6 0.05
ACGTcount: A:0.26, C:0.16, G:0.04, T:0.54
Consensus pattern (35 bp):
TACTAACTTACTAACTTTTTTATTTTTATTGTTCA
Found at i:5733 original size:42 final size:39
Alignment explanation
Indices: 5679--5756 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 39
5669 TTATTGTTCA
* *
5679 TACTAACTTTCTAACTTTTTTATTTTTATTGTTCTTACTGAT
1 TACTAACATTCTAAC--TTTTA-TTTTATTGTTCATACTGAT
5721 TACTAACATTCTAACTTTTATTTTATTGTTCATACT
1 TACTAACATTCTAACTTTTATTTTATTGTTCATACT
5757 AACATACTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 15 0.44
40 5 0.15
42 14 0.41
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.56
Consensus pattern (39 bp):
TACTAACATTCTAACTTTTATTTTATTGTTCATACTGAT
Found at i:5734 original size:74 final size:75
Alignment explanation
Indices: 5641--5805 Score: 260
Period size: 74 Copynumber: 2.2 Consensus size: 75
5631 GTTAACTTTT
* * *
5641 CTAACTTACTAACATTCTAACTTTTATTTTATTGTTCATACTAACTTTCTAACTTTTTTATTTTT
1 CTAACTTACTAACATTCTAACTTTTATTTTATTGTTCATACTAACATACTAACATTTTTATTTTT
*
5706 ATTGTTCTTA
66 ATTGTTCTCA
* *
5716 CTGA-TTACTAACATTCTAACTTTTATTTTATTGTTCATACTAACATACTGACATTTTTATTTTT
1 CTAACTTACTAACATTCTAACTTTTATTTTATTGTTCATACTAACATACTAACATTTTTATTTTT
5780 ATTGTTCTCA
66 ATTGTTCTCA
*
5790 CTAACTCACTAACATT
1 CTAACTTACTAACATT
5806 TTATTTTATT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
74 68 0.84
75 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.52
Consensus pattern (75 bp):
CTAACTTACTAACATTCTAACTTTTATTTTATTGTTCATACTAACATACTAACATTTTTATTTTT
ATTGTTCTCA
Found at i:6491 original size:12 final size:12
Alignment explanation
Indices: 6476--6515 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
6466 TTATTTTTTC
6476 TTATTATTCTAT
1 TTATTATTCTAT
6488 TTATT-TT-TAT
1 TTATTATTCTAT
6498 CTTATTATTCTAT
1 -TTATTATTCTAT
6511 TTATT
1 TTATT
6516 TTATATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.12
11 7 0.28
12 12 0.48
13 3 0.12
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATTATTCTAT
Found at i:6500 original size:23 final size:23
Alignment explanation
Indices: 6465--6522 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 23
6455 TTATTTTTGT
6465 TTTATTTTT-TCTTATTATTCTA
1 TTTATTTTTATCTTATTATTCTA
6487 TTTATTTTTATCTTATTATTCTA
1 TTTATTTTTATCTTATTATTCTA
6510 TTTATTTTATATC
1 TTTATTTT-TATC
6523 ATTCTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 9 0.26
23 21 0.62
24 4 0.12
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTATTTTTATCTTATTATTCTA
Found at i:6526 original size:19 final size:20
Alignment explanation
Indices: 6471--6537 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 20
6461 TTGTTTTATT
* *
6471 TTTTCTTATTATTCTATTTA
1 TTTTATTATCATTCTATTTA
*
6491 TTTTTATCTTATTATTCTATTTA
1 -TTTTA--TTATCATTCTATTTA
6514 TTTTA-TATCATTCTATTTTA
1 TTTTATTATCATTCTA-TTTA
6534 TTTT
1 TTTT
6538 CTTTATTTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.22
20 8 0.20
21 4 0.10
22 5 0.12
23 15 0.37
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTATTATCATTCTATTTA
Found at i:7620 original size:27 final size:27
Alignment explanation
Indices: 7585--7641 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
7575 AGTGTTGTCT
*
7585 TTTGTCATGTTTTCAAAGGATTGTGAG
1 TTTGCCATGTTTTCAAAGGATTGTGAG
7612 TTTGCCATGTTTTCAAAGGATTGTGAG
1 TTTGCCATGTTTTCAAAGGATTGTGAG
7639 TTT
1 TTT
7642 CTCCTCACAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.09, G:0.25, T:0.46
Consensus pattern (27 bp):
TTTGCCATGTTTTCAAAGGATTGTGAG
Found at i:15381 original size:25 final size:25
Alignment explanation
Indices: 15353--15408 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
15343 CGATCAGATC
15353 TCCTCAACGCGCATGAGCATCATCA
1 TCCTCAACGCGCATGAGCATCATCA
15378 TCCTCAACGCGCATGAGCATCATCA
1 TCCTCAACGCGCATGAGCATCATCA
15403 TCCTCA
1 TCCTCA
15409 GGCAATCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.38, G:0.14, T:0.21
Consensus pattern (25 bp):
TCCTCAACGCGCATGAGCATCATCA
Found at i:15547 original size:164 final size:165
Alignment explanation
Indices: 15240--15547 Score: 395
Period size: 164 Copynumber: 1.9 Consensus size: 165
15230 CATGTTATCA
* * * * * * *
15240 TCAGGTAATCAGACTTTCTCATCACGTAAGAATCGTGTTGTCTCCAAATTATCCCCCTAAAGACG
1 TCAGGCAATCAAACTTCCTCATCACATAAGAACCGTGTTGTCTCCAAATTAT-CCCATAAAGAAG
* * * *
15305 GCTAGACGTCCTCATCATATTGGAACAATATCATCCAACGATCAGATCTCCTCAACGCGCATGAG
65 GCTAGACGTCCTCAACATATAGGAACAATATCATCCAACGACCAGATCTCCTCAACGCGCAGGAG
*
15370 CATCATCATCCTCAACGCGCATGAGCATCATCATCC
130 CAACATCATCCTCAACGCGCATGAGCATCATCATCC
*
15406 TCAGGCAATCAAACTTCCTCATCACATAGGAACCGTGTTGTCTCCAAATTAT-CCATAAAGAAGG
1 TCAGGCAATCAAACTTCCTCATCACATAAGAACCGTGTTGTCTCCAAATTATCCCATAAAGAAGG
* * * * * *
15470 CTAGATGTCCTCAACATGA-AGGAACAATGTCGTCCATCGGCCAGATCTCCTCAACGCGTAGGAG
66 CTAGACGTCCTCAACAT-ATAGGAACAATATCATCCAACGACCAGATCTCCTCAACGCGCAGGAG
* *
15534 CAACGTTATCCTCA
130 CAACATCATCCTCA
15548 TGCAATCAGG
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
164 73 0.61
165 1 0.01
166 46 0.38
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (165 bp):
TCAGGCAATCAAACTTCCTCATCACATAAGAACCGTGTTGTCTCCAAATTATCCCATAAAGAAGG
CTAGACGTCCTCAACATATAGGAACAATATCATCCAACGACCAGATCTCCTCAACGCGCAGGAGC
AACATCATCCTCAACGCGCATGAGCATCATCATCC
Found at i:15666 original size:134 final size:138
Alignment explanation
Indices: 15378--15699 Score: 355
Period size: 134 Copynumber: 2.4 Consensus size: 138
15368 AGCATCATCA
* * * * * *
15378 TCCTCAACGCGCATGAGCATCATCATCCTCAGGCAATCAAACTTCCTCATCACATAGGAACCGTG
1 TCCTCAACGCGTAGGAGCAACGTCATCCTCATGCAATCAGACTTCCTCATCACATAGGAACCGTG
* * * *
15443 TTGTCTCCAAATTATCCATAAAGAAGGCTAGATGTCCTCAACATGAAGGAACAATGTCGTCCATC
66 TTGTCTACAAA-TATCCATAAAGAAGGCTAGATGTCCTCAACACGAAGGAACAATGTCATCCACC
* * *
15508 GGCCAGATC
130 GACAAAATC
* * * * *
15517 TCCTCAACGCGTAGGAGCAACGTTATCCTCATGCAATCAGGCTTCCTCGTCACGTATGAACCGTG
1 TCCTCAACGCGTAGGAGCAACGTCATCCTCATGCAATCAGACTTCCTCATCACATAGGAACCGTG
* * * * *
15582 TTGTCTAC-AA-A-CC-TAAAGATGGCTAGATGTCTTCATCACGTAGGAACAATTTCATCCACCG
66 TTGTCTACAAATATCCATAAAGAAGGCTAGATGTCCTCAACACGAAGGAACAATGTCATCCACCG
15643 ACAAAATC
131 ACAAAATC
* * * * *
15651 TCCTTAATGCGTAGGAGCAATGTCATCCTTATACAATCAGACTTCCTCA
1 TCCTCAACGCGTAGGAGCAACGTCATCCTCATGCAATCAGACTTCCTCA
15700 ACGAGAAGGA
Statistics
Matches: 152, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
134 86 0.57
135 2 0.01
136 1 0.01
138 2 0.01
139 61 0.40
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (138 bp):
TCCTCAACGCGTAGGAGCAACGTCATCCTCATGCAATCAGACTTCCTCATCACATAGGAACCGTG
TTGTCTACAAATATCCATAAAGAAGGCTAGATGTCCTCAACACGAAGGAACAATGTCATCCACCG
ACAAAATC
Found at i:17468 original size:32 final size:32
Alignment explanation
Indices: 17427--17603 Score: 115
Period size: 32 Copynumber: 5.1 Consensus size: 32
17417 TCTAACTTAT
17427 TAACATTCTAAATTTTATTTTATTGTTCATAC
1 TAACATTCTAAATTTTATTTTATTGTTCATAC
**
17459 TAACATTCTATCTTTTTATTTTTATTGTTTTTACTAACTTAC
1 TAACATTCTA-AATTTTA-TTTTATTG---TT-C--A--TAC
* * *
17501 TATAACAATCTAACTTTTATTTTATTGTTCATTC
1 --TAACATTCTAAATTTTATTTTATTGTTCATAC
* * *
17535 TAACATACTAACCTTTT-TTTTATTGTTCTTAC
1 TAACATTCTAA-ATTTTATTTTATTGTTCATAC
* *
17567 TAAC-TTACTAACATTTTATTTTATTGTACAAAC
1 TAACATT-CTAA-ATTTTATTTTATTGTTCATAC
17600 TAAC
1 TAAC
17604 CCGCTAATTT
Statistics
Matches: 115, Mismatches: 15, Indels: 29
0.72 0.09 0.18
Matches are distributed among these distances:
31 1 0.01
32 45 0.39
33 26 0.23
34 10 0.09
36 1 0.01
37 2 0.02
38 2 0.02
39 2 0.02
40 1 0.01
42 11 0.10
43 5 0.04
44 9 0.08
ACGTcount: A:0.29, C:0.15, G:0.03, T:0.53
Consensus pattern (32 bp):
TAACATTCTAAATTTTATTTTATTGTTCATAC
Found at i:17602 original size:33 final size:32
Alignment explanation
Indices: 17510--17603 Score: 118
Period size: 32 Copynumber: 2.9 Consensus size: 32
17500 CTATAACAAT
*
17510 CTAACTTTTATTTTATTGTTCATTCTAACATA
1 CTAACTTTTATTTTATTGTTCATACTAACATA
* *
17542 CTAACCTTTT-TTTTATTGTTCTTACTAACTTA
1 CTAA-CTTTTATTTTATTGTTCATACTAACATA
* *
17574 CTAACATTTTATTTTATTGTACAAACTAAC
1 CTAAC-TTTTATTTTATTGTTCATACTAAC
17604 CCGCTAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
31 1 0.02
32 31 0.58
33 21 0.40
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (32 bp):
CTAACTTTTATTTTATTGTTCATACTAACATA
Found at i:17727 original size:4 final size:4
Alignment explanation
Indices: 17708--17759 Score: 63
Period size: 4 Copynumber: 13.0 Consensus size: 4
17698 TAACTTTTAA
*
17708 ATTT ATGT ATTTT ATTT ATTT ATTT ATTT ATTT A-TT -TTT ATTTT ATTT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT
17756 ATTT
1 ATTT
17760 TTCCGCACTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
3 4 0.10
4 31 0.74
5 7 0.17
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:19508 original size:11 final size:11
Alignment explanation
Indices: 19492--19518 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
19482 ACATTCTATC
19492 AATTTGATCAT
1 AATTTGATCAT
19503 AATTTGATCAT
1 AATTTGATCAT
19514 AATTT
1 AATTT
19519 AATTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (11 bp):
AATTTGATCAT
Found at i:24502 original size:43 final size:42
Alignment explanation
Indices: 24452--24912 Score: 221
Period size: 44 Copynumber: 10.6 Consensus size: 42
24442 GGGCCTGCAA
* * *
24452 AAACGGTAAGGTTTTACCCTTGCACATAGAAAAAGAGCATGGT
1 AAACGGTAAGG-CTTACCCTTGCACATAGAAAAGGAGCCTGGT
*** *
24495 AAACGGTAAGGTCTTATTATTGCACATAGAAAAGGAGCCTAGT
1 AAACGGTAAGG-CTTACCCTTGCACATAGAAAAGGAGCCTGGT
** * * *
24538 AAAAACTATAAGGCTTACCCTTACACATAGCAAAGGAGCCTGGG
1 --AAACGGTAAGGCTTACCCTTGCACATAGAAAAGGAGCCTGGT
* * * * *
24582 AAACTGTAAGGCTTACCCTTGTACACA-ACAAAGGAACCTGGGG
1 AAACGGTAAGGCTTACCCTTGCACATAGA-AAAGGAGCCT-GGT
* * * *
24625 AAACTGTAAGGTCTTACCCTTGCACACA-ACAAAGGAACCTGGGG
1 AAACGGTAAGG-CTTACCCTTGCACATAGA-AAAGGAGCCT-GGT
* * * * ** * *
24669 AAACTGTAAGGTCTTACCCTTGTACACAGCAAATAAACCTGGGG
1 AAACGGTAAGG-CTTACCCTTGCACATAGAAAAGGAGCCT-GGT
** * * * * *
24713 AAACTATAAGGCTTACCCTTACACACA-ACAAAAGAACCTGGGGA
1 AAACGGTAAGGCTTACCCTTGCACATAGA-AAAGGAGCCT--GGT
* * * * *
24757 AAACTGTAAGGCTTACCCTTGCATACA-ACAAAGGAACCTGGGGA
1 AAACGGTAAGGCTTACCCTTGCACATAGA-AAAGGAGCCT--GGT
* * * * *
24801 AAACTGTAAGGCTTACACTTGCACACA-ACAAAGGAACCTGGGGA
1 AAACGGTAAGGCTTACCCTTGCACATAGA-AAAGGAGCCT--GGT
* ** * * *
24845 AAACTGTAAGGCTTACATTTGCACATAGCAAAGGAACCTGGGG
1 AAACGGTAAGGCTTACCCTTGCACATAGAAAAGGAGCCT-GGT
*
24888 AAACTGTAAGGCTTACCCTTGCACA
1 AAACGGTAAGGCTTACCCTTGCACA
24913 CAACAAAGGA
Statistics
Matches: 363, Mismatches: 46, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
42 32 0.09
43 98 0.27
44 224 0.62
45 9 0.02
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (42 bp):
AAACGGTAAGGCTTACCCTTGCACATAGAAAAGGAGCCTGGT
Found at i:24573 original size:44 final size:43
Alignment explanation
Indices: 24540--24982 Score: 618
Period size: 44 Copynumber: 10.2 Consensus size: 43
24530 AGCCTAGTAA
* * * * *
24540 AAACTATAAGGCTTACCCTTACACATAGCAAAGGAGCCT-GGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
*
24582 AAACTGTAAGGCTTACCCTTGTACACAACAAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
24625 AAACTGTAAGGTCTTACCCTTGCACACAACAAAGGAACCTGGGG
1 AAACTGTAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGG
* * **
24669 AAACTGTAAGGTCTTACCCTTGTACACAGCAAATAAACCTGGGG
1 AAACTGTAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGG
* * *
24713 AAACTATAAGGCTTACCCTTACACACAACAAAAGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
*
24756 AAAACTGTAAGGCTTACCCTTGCATACAACAAAGGAACCTGGGG
1 -AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
*
24800 AAAACTGTAAGGCTTACACTTGCACACAACAAAGGAACCTGGGG
1 -AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
** * *
24844 AAAACTGTAAGGCTTACATTTGCACATAGCAAAGGAACCTGGGG
1 -AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
24888 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
* * * * *
24931 AATCTATAAGACTTACCCTTGCTCACAACAAAGGACCCTGGGG
1 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
24974 AAACTGTAA
1 AAACTGTAA
24983 TTAATCCATT
Statistics
Matches: 361, Mismatches: 37, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
42 33 0.09
43 125 0.35
44 203 0.56
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (43 bp):
AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
Found at i:24758 original size:131 final size:129
Alignment explanation
Indices: 24540--24982 Score: 618
Period size: 131 Copynumber: 3.4 Consensus size: 129
24530 AGCCTAGTAA
* * * * *
24540 AAACTATAAGGCTTACCCTTACACATAGCAAAGGAGCCT-GGGAAACTGTAAGGCTTACCCTTGT
1 AAACTATAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGC
24604 ACACAACAAAGGAACCTGGGGAAACTGTAAGGTCTTACCCTTGCACACAACAAAGGAACCTGGGG
66 ACACAACAAAGGAACCTGGGGAAACTGTAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGG
* * * ** * *
24669 AAACTGTAAGGTCTTACCCTTGTACACAGCAAATAAACCTGGGGAAACTATAAGGCTTACCCTTA
1 AAACTATAAGG-CTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTG
* *
24734 CACACAACAAAAGAACCTGGGGAAAACTGTAAGGCTTACCCTTGCATACAACAAAGGAACCTGGG
65 CACACAACAAAGGAACCTGGGG-AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGG
24799 G
129 G
* * **
24800 AAAACTGTAAGGCTTACACTTGCACACAACAAAGGAACCTGGGGAAAACTGTAAGGCTTACATTT
1 -AAACTATAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG-AAACTGTAAGGCTTACCCTT
* *
24865 GCACATAGCAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGG
64 GCACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGG
24930 G
129 G
* * * *
24931 AATCTATAAGACTTACCCTTGCTCACAACAAAGGACCCTGGGGAAACTGTAA
1 AAACTATAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGTAA
24983 TTAATCCATT
Statistics
Matches: 278, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
129 19 0.07
130 59 0.21
131 142 0.51
132 58 0.21
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (129 bp):
AAACTATAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGC
ACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGG
Found at i:24829 original size:175 final size:174
Alignment explanation
Indices: 24540--24982 Score: 651
Period size: 175 Copynumber: 2.5 Consensus size: 174
24530 AGCCTAGTAA
* * * *
24540 AAACTATAAGGCTTACCCTTACACATAGCAAAGGAGCCT-GGGAAACTGTAAGGCTTACCCTTGT
1 AAACTATAAGGCTTACCCTTACACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGC
* *
24604 ACACAACAAAGGAACCTGGGGAAACTGTAAGGTCTTACCCTTGCACACAACAAAGGAACCTGGGG
66 ATACAACAAAGGAACCTGGGGAAACTGTAAGGTCTTACACTTGCACACAACAAAGGAACCTGGGG
* * *
24669 -AAACTGTAAGGTCTTACCCTTGTACACAGCAAATAAACCTGGGG
131 AAAACTGTAAGG-CTTACACTTGCACACAGCAAAGAAACCTGGGG
*
24713 AAACTATAAGGCTTACCCTTACACACAACAAAAGAACCTGGGGAAAACTGTAAGGCTTACCCTTG
1 AAACTATAAGGCTTACCCTTACACACAACAAAGGAACCTGGGG-AAACTGTAAGGCTTACCCTTG
24778 CATACAACAAAGGAACCTGGGGAAAACTGTAAGG-CTTACACTTGCACACAACAAAGGAACCTGG
65 CATACAACAAAGGAACCTGGGG-AAACTGTAAGGTCTTACACTTGCACACAACAAAGGAACCTGG
* * *
24842 GGAAAACTGTAAGGCTTACATTTGCACATAGCAAAGGAACCTGGGG
129 GGAAAACTGTAAGGCTTACACTTGCACACAGCAAAGAAACCTGGGG
* * * * *
24888 AAACTGTAAGGCTTACCCTTGCACACAACAAAGGAACCTGGGGAATCTATAAGACTTACCCTTGC
1 AAACTATAAGGCTTACCCTTACACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGC
*
24953 -TCACAACAAAGGACCCTGGGGAAACTGTAA
66 AT-ACAACAAAGGAACCTGGGGAAACTGTAA
24983 TTAATCCATT
Statistics
Matches: 245, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
173 45 0.18
174 40 0.16
175 138 0.56
176 22 0.09
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (174 bp):
AAACTATAAGGCTTACCCTTACACACAACAAAGGAACCTGGGGAAACTGTAAGGCTTACCCTTGC
ATACAACAAAGGAACCTGGGGAAACTGTAAGGTCTTACACTTGCACACAACAAAGGAACCTGGGG
AAAACTGTAAGGCTTACACTTGCACACAGCAAAGAAACCTGGGG
Found at i:26291 original size:28 final size:27
Alignment explanation
Indices: 26259--26320 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
26249 AATTCTAGGG
* *
26259 TTTAGGGATACTTTAGGTTATTTTACAC
1 TTTAGGGACA-TTTAGGTCATTTTACAC
* *
26287 TTTAGGGGCATTTTGGTCATTTTACAC
1 TTTAGGGACATTTAGGTCATTTTACAC
26314 TTTAGGG
1 TTTAGGG
26321 GTATTTCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.21, C:0.11, G:0.23, T:0.45
Consensus pattern (27 bp):
TTTAGGGACATTTAGGTCATTTTACAC
Found at i:30998 original size:14 final size:14
Alignment explanation
Indices: 30979--31015 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
30969 GGACGTGATG
30979 AAGGAGGAATAATA
1 AAGGAGGAATAATA
*
30993 AAGGAGAAATAATA
1 AAGGAGGAATAATA
*
31007 AGGGAGGAA
1 AAGGAGGAA
31016 CACTTTACGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.32, T:0.11
Consensus pattern (14 bp):
AAGGAGGAATAATA
Found at i:31164 original size:17 final size:17
Alignment explanation
Indices: 31144--31196 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
31134 TTTAGGGAAG
31144 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* **
31161 TAGTTCATTCACCAAAC
1 TAGTTCATTAATTAAAC
*
31178 TAGTTCATTTATTAAAC
1 TAGTTCATTAATTAAAC
31195 TA
1 TA
31197 ACACTTAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:32887 original size:17 final size:17
Alignment explanation
Indices: 32865--32908 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
32855 TAGTTTAATA
32865 GAACTAGTTTGATGAGT
1 GAACTAGTTTGATGAGT
32882 GAACTAGTTTGATGAGT
1 GAACTAGTTTGATGAGT
32899 GAACTAGTTT
1 GAACTAGTTT
32909 AGTTAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (17 bp):
GAACTAGTTTGATGAGT
Found at i:35902 original size:19 final size:20
Alignment explanation
Indices: 35866--35903 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
35856 CTCTTTAAAC
* *
35866 TTTTTCTTTCTTTTATTTTT
1 TTTTTATTTCTTTGATTTTT
35886 TTTTTATTT-TTTGATTTT
1 TTTTTATTTCTTTGATTTT
35904 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.08, C:0.05, G:0.03, T:0.84
Consensus pattern (20 bp):
TTTTTATTTCTTTGATTTTT
Found at i:38657 original size:22 final size:21
Alignment explanation
Indices: 38605--38664 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
38595 GATTTCTGGG
38605 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
38626 CAA-GGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
*
38646 CAATGGGGAATCGATACCC
1 CAA-GGGGAATCGGTACCC
38665 CTCAAGCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 20 0.56
21 3 0.08
22 13 0.36
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGGTACCCATT
Found at i:40202 original size:103 final size:103
Alignment explanation
Indices: 39982--40194 Score: 399
Period size: 103 Copynumber: 2.1 Consensus size: 103
39972 GGGTCTACGC
39982 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* *
40047 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
40085 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
40150 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
40188 GGTCCTT
1 GGTCCTT
40195 ATGGACATTA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 107 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCCTAGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:40260 original size:23 final size:22
Alignment explanation
Indices: 40218--40278 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 22
40208 TATGGCACAA
40218 TGGTGCAATTCTACGCGGCACT
1 TGGTGCAATTCTACGCGGCACT
* *
40240 CTGGTGCAATTCTATGTGGCACT
1 -TGGTGCAATTCTACGCGGCACT
*
40263 TCGGTGCAATTATACG
1 T-GGTGCAATTCTACG
40279 AGCTGTGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 1 0.03
23 32 0.97
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.31
Consensus pattern (22 bp):
TGGTGCAATTCTACGCGGCACT
Found at i:43078 original size:16 final size:16
Alignment explanation
Indices: 43057--43099 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
43047 GGTAATTAAA
43057 GATTGATAAGGAATTT
1 GATTGATAAGGAATTT
* *
43073 GATTGATTAATGATTTT
1 GATTGA-TAAGGAATTT
*
43090 GAGTGATAAG
1 GATTGATAAG
43100 AACTGATGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.40
Consensus pattern (16 bp):
GATTGATAAGGAATTT
Found at i:44040 original size:22 final size:21
Alignment explanation
Indices: 43988--44047 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
43978 GATTTCTGGG
43988 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
44009 CAA-GGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
*
44029 CAATGGGGAATCGATACCC
1 CAA-GGGGAATCGGTACCC
44048 CTCAAGCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 20 0.56
21 3 0.08
22 13 0.36
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGGTACCCATT
Found at i:44125 original size:23 final size:22
Alignment explanation
Indices: 44081--44125 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
44071 AATCTCATAG
*
44081 GGGAACCGATTCCCCCATAGGA
1 GGGAACCGATTCCCCCACAGGA
*
44103 GGGAATCGATTCCCCCTACAGGA
1 GGGAACCGATTCCCCC-ACAGGA
44126 AAAATATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.16
Consensus pattern (22 bp):
GGGAACCGATTCCCCCACAGGA
Found at i:45643 original size:103 final size:103
Alignment explanation
Indices: 45423--45635 Score: 381
Period size: 103 Copynumber: 2.1 Consensus size: 103
45413 GGGTCTACGC
*
45423 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAGTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* * *
45488 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCATAGCATATGTATATGATTATTAAGGAATGATATGT
45526 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
*
45591 CCATAGTATATGTATATGATTATTAAGGAATGATATGT
66 CCATAGCATATGTATATGATTATTAAGGAATGATATGT
45629 GGTCCTT
1 GGTCCTT
45636 ATGGACATTA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 105 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCATAGCATATGTATATGATTATTAAGGAATGATATGT
Found at i:50738 original size:17 final size:17
Alignment explanation
Indices: 50718--50770 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
50708 TTTAGGGAAG
**
50718 TAGTTCATTAATTAAGT
1 TAGTTCATTAATTAAAC
* *
50735 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
*
50752 TAGTTCATTTATTAAAC
1 TAGTTCATTAATTAAAC
50769 TA
1 TA
50771 ACACTTAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:54490 original size:35 final size:35
Alignment explanation
Indices: 54378--54510 Score: 141
Period size: 35 Copynumber: 3.9 Consensus size: 35
54368 TAGATCTGTG
*
54378 AGGAATTACCAGTTCGATCGGTCTGAACCTATATA
1 AGGAATTACCAGTTTGATCGGTCTGAACCTATATA
* * *
54413 AGG---TACCAGTTTGATCGAGT-TGGACCTGTCGTA
1 AGGAATTACCAGTTTGATCG-GTCTGAACCTAT-ATA
*
54446 AGGAATTACCAGTTTGATCGGTCTAAACCTATATA
1 AGGAATTACCAGTTTGATCGGTCTGAACCTATATA
* *
54481 AGGAATTACCATTTTGAACGAGT-TGAACCT
1 AGGAATTACCAGTTTGATCG-GTCTGAACCT
54511 GCAGATACTT
Statistics
Matches: 80, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
32 20 0.25
33 7 0.09
35 31 0.39
36 22 0.28
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (35 bp):
AGGAATTACCAGTTTGATCGGTCTGAACCTATATA
Found at i:54528 original size:71 final size:68
Alignment explanation
Indices: 54378--54511 Score: 196
Period size: 68 Copynumber: 1.9 Consensus size: 68
54368 TAGATCTGTG
* * *
54378 AGGAATTACCAGTTCGATCGGTCTGAACCTATATAAGGTACCAGTTTGATCGAGTTGGACCTGTC
1 AGGAATTACCAGTTCGATCGGTCTAAACCTATATAAGGTACCAGTTTGAACGAGTTGAACCTGTC
54443 GTA
66 GTA
* *
54446 AGGAATTACCAGTTTGATCGGTCTAAACCTATATAAGGAATTACCATTTTGAACGAGTTGAACCT
1 AGGAATTACCAGTTCGATCGGTCTAAACCTATATAAGG---TACCAGTTTGAACGAGTTGAACCT
54511 G
63 G
54512 CAGATACTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
68 36 0.62
71 22 0.38
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (68 bp):
AGGAATTACCAGTTCGATCGGTCTAAACCTATATAAGGTACCAGTTTGAACGAGTTGAACCTGTC
GTA
Found at i:58517 original size:35 final size:35
Alignment explanation
Indices: 58473--58599 Score: 128
Period size: 35 Copynumber: 3.6 Consensus size: 35
58463 CCTTAGATCC
58473 ATAAAGAATTACCAGTTTGATCGATCTGAACCTAT
1 ATAAAGAATTACCAGTTTGATCGATCTGAACCTAT
* * * * * **
58508 AAAAAGAATTACCAGTTTGATCAAGCTGGACATGCC
1 ATAAAGAATTACCAGTTTGATCGATCTGAACCT-AT
* * * * * *
58544 GTAAGGAATTACCAGTTCGATCGGTTTTAACCTAT
1 ATAAAGAATTACCAGTTTGATCGATCTGAACCTAT
58579 ATAAAGAATTACCAGTTTGAT
1 ATAAAGAATTACCAGTTTGAT
58600 TGAGCTATAC
Statistics
Matches: 68, Mismatches: 23, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
35 46 0.68
36 22 0.32
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (35 bp):
ATAAAGAATTACCAGTTTGATCGATCTGAACCTAT
Found at i:61232 original size:30 final size:30
Alignment explanation
Indices: 61171--61243 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
61161 CCCGAAGGAC
** *
61171 CTATCCA-AGGGTCATAAAGATCCTTGATAA
1 CTATCCATA-GGTCATAAAGATAATCGATAA
*
61201 CTATCCATAGGTCATAAAGATAATCGGTAA
1 CTATCCATAGGTCATAAAGATAATCGATAA
*
61231 CTGTCCATAGGTC
1 CTATCCATAGGTC
61244 CCGAAGAACC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 36 0.97
31 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (30 bp):
CTATCCATAGGTCATAAAGATAATCGATAA
Found at i:62018 original size:24 final size:24
Alignment explanation
Indices: 61986--62042 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
61976 TACACCATGT
61986 ATCGATGCATCCCTTGATAGGTGC
1 ATCGATGCATCCCTTGATAGGTGC
62010 ATCGATGCATCCCTTGATAGGTGC
1 ATCGATGCATCCCTTGATAGGTGC
62034 ATCGATGCA
1 ATCGATGCA
62043 CTATCCATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (24 bp):
ATCGATGCATCCCTTGATAGGTGC
Done.