Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002653.1 Hibiscus syriacus cultivar Beakdansim tig00005425_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58512

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2758--2825
17
4.1
16
77
19
68
0
14
5
79
0.91
2758--2828
8
8.8
8
79
14
56
0
15
5
78
0.92
2762--2825
33
2.0
31
85
11
85
0
14
6
79
0.91
2749--2828
24
3.5
23
75
21
78
0
15
6
78
0.93
7253--7288
18
1.9
19
88
5
56
63
0
5
30
1.17
7485--7584
20
4.8
21
70
16
73
63
2
3
32
1.21
8029--8130
37
2.8
37
89
0
141
29
14
14
41
1.86
20977--21084
42
2.6
41
83
4
144
32
24
20
23
1.98
20547--21079
239
2.2
238
87
3
757
36
16
17
30
1.92
21138--21393
53
4.8
53
89
0
368
39
20
8
30
1.83
21344--21477
49
2.8
48
80
3
153
41
19
8
29
1.82
21449--21709
55
4.8
54
80
10
266
42
14
8
34
1.77
21470--21779
55
5.8
56
76
10
258
42
13
9
34
1.76
23061--23135
28
2.6
28
93
2
123
28
4
30
37
1.75
23876--23936
6
10.8
6
77
19
60
0
32
0
67
0.91
23872--23940
8
9.4
8
77
17
62
0
31
0
68
0.90
23865--23916
22
2.4
22
90
3
70
0
32
0
67
0.91
23926--23990
25
2.6
25
80
2
67
6
13
1
78
1.01
23906--23990
13
6.4
13
73
18
68
4
16
1
77
0.99
24213--24273
2
30.5
2
100
0
122
50
0
0
49
1.00
25802--25975
46
3.8
46
93
0
278
27
16
12
43
1.84
26271--26813
54
10.1
54
91
2
842
37
18
12
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29766--29797
10
3.1
11
86
13
50
75
0
0
25
0.81
31314--31349
16
2.3
16
90
4
56
55
0
11
33
1.35
45049--45134
22
3.9
22
80
8
93
22
25
29
23
1.99
50473--50808
109
3.1
110
78
10
330
46
17
14
21
1.83
51769--51798
6
5.0
6
91
0
51
36
0
0
63
0.95
51759--51798
12
3.2
12
85
3
53
42
0
0
57
0.98
52010--52498
133
3.6
134
80
3
513
28
16
21
32
1.96
52726--53991
641
2.0
644
88
2
1902
30
19
12
37
1.89
54438--54478
20
2.1
20
90
4
66
7
7
0
85
0.75
54430--54544
32
3.5
32
69
20
85
10
14
0
74
1.06
54429--54497
18
3.9
17
73
17
52
8
11
0
79
0.93
54429--54497
28
2.5
28
79
9
70
8
11
0
79
0.93
54429--54488
20
3.2
18
75
13
59
8
10
0
81
0.87
54465--54519
25
2.2
24
83
3
65
10
16
0
72
1.11
54448--54512
18
3.7
17
75
16
53
9
13
0
76
1.00
58006--58045
20
2.1
19
85
4
53
35
20
17
27
1.95

Tables:   1

The End!