genome.fa.s2656.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002656.1 Hibiscus syriacus cultivar Beakdansim tig00005432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60113

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260--1363	44	2.3	45	81	8	122	26	21	7	44	1.79
2868--2914	17	2.8	16	87	12	60	34	34	17	14	1.90
2881--2977	44	2.3	41	89	5	140	34	32	15	17	1.91
3327--3374	23	2.1	23	84	7	62	45	10	2	41	1.50
5071--5140	34	2.1	32	86	5	95	20	31	15	32	1.94
8148--8202	18	3.1	18	91	0	92	27	30	18	23	1.97
8670--8705	13	2.5	15	82	17	58	38	25	5	30	1.78
8676--8708	13	2.5	13	100	0	66	42	27	6	24	1.78
9137--9210	21	3.5	22	85	12	102	31	21	16	31	1.95
9152--9231	21	3.8	21	85	8	83	31	21	13	33	1.92
10145--10499	79	4.5	79	91	0	559	29	23	11	35	1.90
10889--10942	22	2.6	20	80	11	63	25	31	14	27	1.95
14290--14824	54	9.9	54	87	0	737	34	17	18	29	1.94
21682--21730	20	2.5	20	83	6	64	36	16	28	18	1.92
22285--22423	34	3.8	34	77	18	152	33	12	25	27	1.93
22232--22473	79	3.1	79	95	0	421	35	12	25	26	1.91
22319--22495	45	4.2	44	78	16	203	34	13	24	27	1.93
27382--27450	23	3.0	23	82	0	84	20	21	23	34	1.96
30683--30720	20	1.9	20	94	0	67	34	15	34	15	1.90
31288--31355	34	2.0	34	94	0	118	36	10	25	27	1.88
31235--31395	79	2.1	77	91	4	261	36	10	24	28	1.89
31328--31413	43	2.0	43	88	0	127	32	10	25	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33944--33990	21	2.2	22	81	11	62	40	2	2	55	1.24
33941--33990	20	2.4	21	86	3	66	42	2	2	54	1.23
33961--34001	21	2.0	21	85	0	55	43	2	4	48	1.37
34215--34260	23	2.0	24	86	4	67	50	2	4	43	1.34
34361--34404	16	2.7	15	80	13	52	36	4	0	59	1.18
35642--35796	21	7.7	20	72	8	82	38	25	17	19	1.93
35762--35957	19	10.6	19	76	15	130	43	21	20	14	1.87
35858--35955	19	5.4	19	85	11	152	46	17	21	14	1.83
35845--35974	33	3.8	33	69	20	113	44	18	23	13	1.85
35845--35974	52	2.5	52	100	0	260	44	18	23	13	1.85
35964--36099	19	7.6	19	76	19	150	15	23	16	44	1.86
36066--36108	20	2.2	20	91	0	68	16	18	16	48	1.81
36202--36238	14	2.6	14	91	0	65	45	21	0	32	1.52
38182--38238	14	3.7	14	77	20	60	45	22	21	10	1.82
38163--38255	33	2.8	33	95	0	168	47	21	20	10	1.80
38126--38260	19	7.6	19	76	16	128	45	23	19	11	1.82
42560--42607	23	2.0	26	84	12	66	68	6	0	25	1.12
44437--45043	38	15.9	37	84	9	582	44	2	5	46	1.42
44445--45043	77	7.9	76	86	8	655	44	2	5	47	1.41
45061--45128	7	9.9	7	73	20	63	17	1	0	80	0.78
45068--45127	11	5.6	10	78	9	57	18	1	0	80	0.80
45061--45128	25	2.8	24	82	4	84	17	1	0	80	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46256--46298	15	2.9	15	78	0	50	18	4	2	74	1.10
46255--46299	23	2.0	23	86	0	63	20	6	2	71	1.20
46374--46408	13	2.6	14	86	9	54	28	0	0	71	0.86
46362--46532	49	3.6	49	72	16	128	19	3	3	73	1.12
46434--46521	11	8.2	11	72	21	62	18	0	2	79	0.83
46439--46522	6	13.5	6	73	14	64	17	0	2	79	0.83
46433--46522	25	3.6	24	81	14	103	17	0	2	80	0.82
46386--46523	18	7.6	17	72	18	102	18	2	3	75	1.08
47910--47945	18	2.0	18	100	0	72	44	0	5	50	1.25
53905--53963	21	2.8	21	94	0	100	49	25	5	20	1.69
57815--57845	12	2.6	12	94	0	53	19	9	22	48	1.78
58305--58433	41	3.1	41	67	18	104	35	15	17	31	1.91
58223--58740	83	6.3	83	80	3	411	35	17	15	31	1.91
58223--58575	167	2.1	165	82	2	420	36	18	15	30	1.91

Tables:   1

The End!