Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002658.1 Hibiscus syriacus cultivar Beakdansim tig00005437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65502

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1466--2042
106
5.5
106
89
2
860
23
18
24
33
1.97
1332--2042
209
3.4
210
86
4
957
23
18
25
33
1.96
1332--2042
315
2.3
308
87
4
1004
23
18
25
33
1.96
3275--3620
171
2.0
173
93
4
592
25
17
20
36
1.94
3709--3742
16
2.1
16
89
10
52
0
14
8
76
1.01
7024--7061
19
2.1
19
90
5
60
71
0
21
7
1.11
8341--8450
10
10.1
11
69
15
52
67
1
3
27
1.17
8527--8573
20
2.4
19
82
7
58
72
0
6
21
1.07
8539--8656
61
1.9
61
83
6
150
71
0
3
25
1.02
8536--8656
4
31.5
4
72
19
55
71
0
3
25
1.02
8599--8656
21
2.7
21
81
10
55
75
0
3
20
0.94
8649--8706
2
29.5
2
96
3
109
51
0
0
48
1.00
24250--24337
31
2.9
29
74
11
88
34
19
18
28
1.95
29602--29646
2
22.5
2
100
0
90
51
0
0
48
1.00
30068--30120
27
2.0
27
92
0
88
50
5
16
26
1.67
31250--31410
66
2.4
66
82
8
202
29
22
13
35
1.92
32275--32327
7
7.4
7
76
4
52
79
5
13
1
0.99
32701--32747
2
23.0
2
95
4
85
48
2
0
48
1.13
36699--37322
85
7.3
85
85
2
741
25
17
20
36
1.94
36699--37322
169
3.7
169
86
2
766
25
17
20
36
1.94
38112--38136
13
1.9
13
100
0
50
0
12
0
88
0.53
39417--39466
24
2.1
24
100
0
100
18
26
32
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43019--43076
7
8.4
7
75
21
52
72
3
1
22
1.09
43011--43076
21
3.2
20
82
16
82
72
3
1
22
1.06
43014--43076
14
4.5
14
73
13
58
73
3
1
22
1.07
43131--43534
38
10.3
38
78
14
419
44
4
3
47
1.41
43390--43421
2
16.5
2
93
6
57
46
0
0
53
1.00
43313--43491
89
2.0
86
88
5
261
44
4
2
48
1.37
43405--43529
36
3.4
37
81
9
139
44
4
4
46
1.46
43277--43542
125
2.1
128
89
4
405
44
4
4
46
1.44
43201--43608
202
2.0
199
81
11
463
45
5
3
44
1.45
45008--45066
30
1.9
31
83
10
77
67
5
1
25
1.20
46251--46304
9
5.7
9
78
8
54
68
0
5
25
1.11
46332--46641
36
8.4
36
79
6
241
41
10
3
44
1.57
46332--46641
72
4.2
72
77
6
284
41
10
3
44
1.57

Tables:   1

The End!