genome.fa.s2659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002659.1 Hibiscus syriacus cultivar Beakdansim tig00005440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144091

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2481--2523	18	2.4	18	96	0	77	23	4	0	72	1.04
5855--5883	10	2.7	11	89	10	51	34	0	10	55	1.34
6165--6198	2	18.0	2	88	11	54	50	0	0	50	1.00
11545--11602	24	2.4	24	97	0	107	27	24	20	27	1.99
20812--20863	25	2.1	25	96	0	95	34	9	40	15	1.80
27588--27917	159	2.1	156	85	4	439	48	7	16	26	1.72
28149--28185	19	1.9	19	89	10	58	21	24	0	54	1.45
28247--28309	19	3.3	19	77	0	72	34	15	3	46	1.62
36372--36994	312	2.0	312	92	1	1043	36	19	11	32	1.88
38211--38252	21	2.0	22	90	4	68	28	23	16	30	1.96
38331--38387	30	1.9	30	85	0	78	31	26	14	28	1.94
44402--44466	12	5.4	12	68	14	53	38	20	18	23	1.93
44390--44518	24	5.4	24	86	5	118	41	19	14	24	1.89
44404--44522	24	5.0	24	88	4	168	38	19	16	25	1.92
44407--44540	24	5.6	24	85	0	133	41	18	14	25	1.89
46303--46375	36	2.0	36	97	0	137	28	20	8	42	1.81
49893--50038	73	2.0	72	89	4	222	52	6	1	39	1.35
51791--51881	29	3.1	29	78	9	103	15	13	13	58	1.64
57745--57906	67	2.4	66	83	9	197	27	19	14	38	1.90
57859--57933	31	2.5	31	83	14	86	29	20	13	37	1.90
57792--57998	97	2.1	95	83	7	247	27	19	14	38	1.91
57745--57933	32	5.8	31	70	16	107	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58551--58622	3	24.7	3	91	5	121	36	0	0	63	0.94
60075--60101	2	13.5	2	100	0	54	48	0	0	51	1.00
60650--60696	17	2.8	17	96	0	85	44	12	2	40	1.54
63237--63332	50	1.9	49	87	2	138	42	10	6	40	1.64
71308--71393	37	2.3	37	79	18	106	45	0	3	51	1.18
72748--72786	16	2.4	16	95	0	69	51	17	5	25	1.66
84542--84610	21	3.3	21	91	0	120	26	24	18	30	1.98
85644--85716	28	2.6	28	77	12	78	58	2	2	35	1.26
94494--94805	46	6.8	46	76	10	178	22	23	11	42	1.86
94559--95129	26	24.6	20	72	20	174	22	23	11	42	1.86
94501--94805	92	3.3	91	78	11	343	22	23	11	41	1.87
94534--95305	72	11.0	72	73	16	536	22	22	11	43	1.85
94520--94733	66	3.2	66	85	7	284	22	24	11	40	1.88
94520--94776	138	1.9	136	84	6	344	22	25	11	40	1.88
94789--95248	46	9.9	46	86	3	589	22	21	11	44	1.84
100779--100822	2	22.0	2	95	0	79	50	2	0	47	1.13
100769--100818	12	4.2	12	92	0	64	46	4	2	48	1.32
101090--101850	135	5.6	135	83	3	868	31	18	19	30	1.96
104286--104342	13	4.4	13	95	0	96	28	21	19	31	1.97
104322--104483	85	1.9	84	83	6	211	31	18	17	32	1.95
104891--104963	36	2.0	36	97	0	137	38	19	5	36	1.75
106959--107030	2	38.5	2	74	13	55	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108808--108864	3	18.7	3	81	3	69	59	0	0	40	0.97
109019--109655	76	8.4	76	97	0	1148	34	22	18	24	1.96
110335--110413	22	3.6	22	89	0	131	41	12	12	32	1.81
114421--114555	72	1.9	72	88	0	207	35	18	20	25	1.95
118570--118595	10	2.6	10	100	0	52	84	0	0	15	0.62
118563--118604	18	2.3	18	80	8	50	85	2	0	11	0.68
120485--120521	2	18.5	2	100	0	74	51	0	0	48	1.00
121721--121782	3	20.7	3	73	6	54	56	0	0	43	0.99
121963--121987	2	12.5	2	100	0	50	52	0	0	48	1.00
123798--123938	57	2.5	56	84	7	178	45	12	4	36	1.64
126139--127043	453	2.0	454	95	0	1641	41	19	14	24	1.89
127064--127175	56	2.0	56	100	0	224	64	1	10	23	1.35
128865--128903	12	3.2	12	92	7	62	28	17	15	38	1.91
130969--131016	22	2.2	22	81	7	53	58	4	6	31	1.42
136625--136663	17	2.3	17	87	12	62	0	20	0	79	0.73
136625--136668	18	2.5	16	82	17	52	2	20	0	77	0.88
136626--136673	17	2.7	18	87	6	53	4	22	0	72	1.01
136978--137033	29	2.0	27	82	6	67	50	5	8	35	1.57
137555--137594	18	2.2	19	86	4	55	47	2	0	50	1.14
142953--143010	19	3.0	19	85	12	82	29	12	10	48	1.73
143116--143175	29	2.0	30	93	6	104	35	6	15	43	1.72
143308--143372	16	4.0	17	84	9	91	23	36	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143403--143444	21	2.0	21	90	9	68	33	23	21	21	1.97

Tables:   1

The End!