genome.fa.s2662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002662.1 Hibiscus syriacus cultivar Beakdansim tig00005463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218144

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434--468	18	1.9	18	94	0	61	37	0	8	54	1.31
463--507	23	2.0	23	86	0	63	48	0	0	51	1.00
1529--1553	2	12.5	2	100	0	50	48	0	0	52	1.00
2877--2918	14	3.0	14	80	10	50	54	0	0	45	0.99
3420--3489	21	3.4	21	80	9	81	40	12	8	38	1.74
5251--5584	146	2.3	147	91	4	534	30	13	14	41	1.84
6598--6628	14	2.2	14	100	0	62	41	6	0	51	1.27
7373--7407	16	2.2	16	100	0	70	22	14	34	28	1.93
9330--9369	2	20.0	2	100	0	80	50	0	50	0	1.00
20304--20602	148	2.0	148	100	0	598	32	22	21	24	1.98
26666--26705	21	1.9	21	100	0	80	52	10	12	25	1.70
26979--27041	15	4.4	15	64	11	51	14	25	41	19	1.89
27026--27077	21	2.5	21	93	0	86	15	13	53	17	1.72
27201--27284	27	3.3	27	66	19	81	19	5	55	19	1.62
27101--27234	36	3.7	36	92	0	232	20	7	55	17	1.65
27190--27294	48	2.2	48	100	0	210	18	5	57	19	1.60
28043--28085	6	7.2	6	83	0	50	16	6	62	13	1.51
28043--28090	18	2.7	18	83	6	53	14	10	62	12	1.54
28063--28278	42	5.2	42	88	5	314	19	6	59	14	1.57
33149--33188	13	3.2	13	89	7	64	55	0	0	45	0.99
36177--36217	8	5.2	8	82	5	57	34	0	29	36	1.58
36277--36897	129	4.9	129	95	1	1119	22	24	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36285--36897	255	2.4	255	99	0	1199	22	25	20	31	1.98
37285--37378	27	3.0	34	73	20	112	40	3	4	52	1.37
37285--37378	28	3.2	28	83	11	100	40	3	4	52	1.37
37898--37987	21	4.3	22	91	5	125	21	26	33	18	1.96
37995--38042	21	2.3	21	85	0	60	22	12	39	25	1.89
39768--39842	31	2.4	33	77	11	84	60	1	0	38	1.06
39765--39853	34	2.7	31	81	6	97	59	2	0	38	1.10
39800--39876	34	2.2	34	82	13	95	64	3	0	31	1.11
39827--39874	16	2.8	18	75	18	57	66	4	0	29	1.10
40784--40821	14	2.6	15	84	15	53	57	0	7	34	1.28
41177--41238	31	2.0	31	96	0	115	22	14	38	24	1.91
41249--41293	22	2.1	21	95	4	81	22	24	35	17	1.95
41332--41403	29	2.5	29	83	0	108	18	34	31	15	1.92
44854--44890	2	18.5	2	100	0	74	48	0	0	51	1.00
45085--45236	59	2.5	60	84	2	198	32	20	16	30	1.95
49865--49910	16	2.8	16	86	6	56	50	2	2	45	1.26
50173--50237	19	3.4	19	93	0	112	10	26	41	21	1.86
51201--51356	78	2.0	78	98	0	303	42	2	16	38	1.61
52294--52341	22	2.1	22	92	3	78	37	4	12	45	1.61
55583--55645	31	2.0	31	90	0	99	34	6	28	30	1.82
59948--59991	21	2.1	20	83	8	52	63	6	0	29	1.20
60307--60366	31	1.9	32	83	10	79	51	6	15	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62708--62772	30	2.2	30	97	0	121	26	12	21	40	1.88
62731--62932	105	1.9	105	84	6	266	26	19	19	34	1.96
62988--64408	159	8.9	159	96	0	2391	24	17	25	31	1.97
67646--67690	20	2.3	20	85	11	58	37	26	0	35	1.57
69956--70038	29	2.8	29	92	1	139	43	9	14	32	1.78
74720--74802	29	2.8	29	92	1	139	43	9	14	32	1.78
83903--84480	292	2.0	292	95	0	1048	37	12	12	37	1.82
87453--87482	15	1.9	16	93	6	53	43	6	23	26	1.78
88206--88286	30	2.7	29	76	10	92	38	11	8	41	1.71
93470--94592	51	21.4	55	85	8	285	26	24	17	31	1.97
93661--95021	51	26.0	51	86	6	1739	24	24	19	31	1.98
95366--95568	36	5.6	36	76	6	171	24	18	20	36	1.94
95406--95568	72	2.3	72	82	4	204	23	18	19	38	1.93
95437--95585	72	2.1	72	86	5	203	23	16	22	38	1.93
96761--97138	126	3.0	125	85	3	519	24	27	16	31	1.96
100414--100452	6	6.5	6	91	8	62	46	15	17	20	1.84
100414--100452	13	3.2	12	89	10	62	46	15	17	20	1.84
101184--101273	46	2.0	46	82	4	110	38	21	7	32	1.82
105271--105333	29	2.1	30	83	13	78	9	9	4	76	1.15
107646--107803	21	7.8	20	72	7	86	38	25	17	18	1.92
107770--108039	20	13.5	20	80	6	260	37	24	17	20	1.94
107809--108039	40	5.8	40	91	4	288	35	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108722--108768	24	2.0	24	87	8	69	25	14	21	38	1.92
111196--111373	33	5.2	34	84	10	211	47	17	20	14	1.83
111210--111379	19	9.7	19	76	19	181	46	17	20	15	1.84
111196--111370	72	2.6	66	82	11	217	47	17	20	14	1.82
111388--111485	19	5.4	19	84	13	143	14	22	17	45	1.84
111369--111485	53	2.2	53	96	1	218	13	24	17	43	1.86
111592--111628	14	2.6	14	91	0	65	45	21	0	32	1.52
113605--113661	14	3.7	14	77	20	60	45	22	21	10	1.82
113586--113678	33	2.8	33	95	0	168	47	21	20	10	1.80
113549--113683	19	7.6	19	76	16	128	45	23	19	11	1.82
113679--113807	19	7.3	19	75	17	125	8	17	28	45	1.77
113679--113770	33	2.8	33	93	3	150	7	18	28	45	1.76
113855--114136	92	3.1	93	97	1	541	45	19	12	22	1.83
115835--115924	14	5.7	14	69	23	63	44	22	23	10	1.82
115827--115941	33	3.5	33	97	0	221	46	20	22	10	1.80
115849--115941	19	5.4	19	69	23	89	46	21	21	10	1.81
115958--116014	14	3.7	14	75	20	60	8	24	22	43	1.81
115953--116022	33	2.1	33	100	0	140	8	24	20	47	1.78
115999--116074	21	3.7	21	83	3	109	11	25	17	46	1.82
115998--116075	41	1.9	41	97	0	147	12	25	16	44	1.83
116154--116224	33	2.2	33	92	0	115	47	18	22	11	1.80
116405--116459	22	2.5	22	81	0	74	20	16	40	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116606--116759	20	7.7	20	80	7	159	18	17	26	37	1.93
116605--116759	40	3.8	40	81	4	177	18	17	26	38	1.92
116746--116828	21	4.0	21	73	6	78	25	16	24	33	1.96
116726--116824	42	2.4	43	77	11	100	21	18	23	37	1.94
120145--120220	35	2.2	35	87	0	116	43	26	5	25	1.75
120465--120544	30	2.7	29	75	11	81	38	10	7	43	1.66
125352--125414	18	3.7	18	82	14	71	50	9	38	1	1.44
125657--125726	34	2.1	34	100	0	140	52	11	5	30	1.60
134975--135140	82	2.0	82	90	0	260	26	20	35	17	1.95
135804--135862	31	1.9	31	82	0	73	45	11	16	25	1.82
143071--143118	24	2.0	24	100	0	96	25	16	33	25	1.96
149816--149881	32	2.1	32	100	0	132	21	22	9	46	1.79
152005--152049	22	2.0	23	95	4	83	51	8	17	22	1.73
161223--161262	18	2.2	18	90	0	62	22	20	32	25	1.98
162928--162968	18	2.3	18	91	4	66	63	2	4	29	1.28
164205--164254	21	2.4	21	82	0	55	48	8	6	38	1.57
172767--172820	3	18.0	3	100	0	108	66	0	0	33	0.92
182290--182327	19	2.0	19	85	10	51	60	0	5	34	1.19
190268--190311	15	2.9	15	93	0	70	13	15	54	15	1.71
192449--192488	21	1.9	21	85	10	55	50	2	12	35	1.54
197545--197585	21	1.9	22	90	5	66	41	21	14	21	1.89
202040--202087	20	2.5	18	78	15	51	58	10	6	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202905--202957	9	5.7	9	82	8	70	15	24	30	30	1.95
202904--202973	19	3.7	19	92	3	106	18	25	28	27	1.98
202967--203023	17	3.4	17	95	0	96	19	38	24	17	1.93
203947--204034	32	2.8	31	77	5	88	20	28	27	23	1.99
208427--208469	2	21.5	2	90	0	68	48	2	0	48	1.14
208474--208562	23	3.9	22	82	12	108	65	1	3	30	1.16
208474--208550	12	6.7	11	82	10	84	64	1	2	31	1.15
209651--209681	15	2.0	16	93	6	55	0	12	9	77	0.99
209984--210061	39	2.0	39	89	0	120	17	17	42	21	1.89
210284--210505	113	2.0	113	93	0	381	27	19	16	37	1.93

Tables:   1   2