Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002664.1 Hibiscus syriacus cultivar Beakdansim tig00005470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93542

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6069--6161
37
2.4
39
82
3
118
67
8
2
21
1.28
8583--8616
14
2.4
14
90
0
50
79
0
0
20
0.73
8591--8633
18
2.3
18
81
14
52
69
2
0
27
1.00
8631--8855
69
3.2
69
79
9
235
47
8
4
39
1.54
8758--8782
11
2.3
11
100
0
50
44
8
8
40
1.63
8658--8884
35
6.4
36
74
14
179
43
7
5
43
1.55
8731--8884
34
4.3
34
83
12
168
43
7
5
44
1.54
8658--8884
71
3.2
69
79
12
223
43
7
5
43
1.55
8732--8884
72
2.1
71
85
8
204
43
6
5
44
1.52
8658--8950
37
8.3
35
74
13
192
44
7
4
43
1.53
8732--8906
72
2.4
70
80
11
192
44
6
4
45
1.49
9512--10034
81
6.4
80
78
6
487
24
21
25
29
1.99
9541--10012
164
2.9
163
88
1
669
24
20
25
29
1.99
13330--13365
18
1.9
18
88
5
54
69
8
11
11
1.37
14956--14992
6
6.2
6
87
0
56
62
0
2
35
1.10
16415--16685
37
7.4
36
73
13
157
45
7
4
43
1.50
16465--16687
75
3.1
74
81
11
234
44
6
3
44
1.47
16484--16687
37
5.6
38
77
10
164
44
5
3
46
1.44
22697--22729
14
2.4
14
94
0
57
6
12
27
54
1.60
22718--22772
24
2.3
24
96
0
101
18
10
12
58
1.63
23500--23555
16
3.5
16
90
0
94
8
12
23
55
1.65
23623--23655
16
2.1
16
100
0
66
6
12
24
57
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38753--38897
71
2.0
71
98
0
281
33
10
20
35
1.86
41610--41642
14
2.3
15
89
5
50
6
24
3
66
1.28
43824--43858
2
17.5
2
100
0
70
48
0
0
51
1.00
50430--50454
11
2.3
11
100
0
50
0
12
0
88
0.53
61564--61723
64
2.5
63
84
7
189
34
18
21
25
1.96
61600--61724
64
1.9
65
90
6
200
35
16
20
27
1.94
63017--63080
21
3.0
21
88
4
101
23
26
23
26
2.00
83511--83544
16
2.1
17
89
10
54
61
5
2
29
1.34
85281--85440
63
2.5
63
86
4
216
34
18
21
25
1.96
86726--86786
22
2.9
21
90
4
95
24
26
24
24
2.00
91944--92077
66
2.0
67
88
4
200
24
17
14
42
1.88

Tables:   1

The End!