genome.fa.s2665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002665.1 Hibiscus syriacus cultivar Beakdansim tig00005477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155634

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436--1640	43	4.7	43	78	6	207	50	5	18	24	1.69
16889--16930	14	3.0	14	100	0	84	50	7	0	42	1.30
18457--18503	18	2.6	17	81	18	51	44	2	0	53	1.12
18518--18547	13	2.2	14	94	5	53	43	6	0	50	1.28
20616--20640	2	12.5	2	100	0	50	48	0	0	52	1.00
21444--21497	22	2.6	21	77	13	58	46	18	3	31	1.67
23402--23449	19	2.5	20	89	3	71	50	6	12	31	1.65
26663--26718	22	2.6	21	77	2	58	53	0	7	39	1.28
27952--27979	14	2.0	14	100	0	56	14	21	14	50	1.78
29261--30186	466	2.0	461	90	3	1475	28	15	18	37	1.91
29796--32301	840	3.0	839	91	3	3929	28	15	18	37	1.92
36335--36393	26	2.3	26	100	0	118	23	30	20	25	1.98
43405--43441	18	2.1	18	100	0	74	35	5	32	27	1.79
47334--47396	33	1.9	33	90	0	99	22	34	22	20	1.96
49482--49539	27	2.1	27	93	0	98	15	36	5	43	1.69
50854--51122	125	2.2	125	94	0	475	27	19	13	39	1.89
51622--51675	3	18.0	3	86	7	74	38	0	0	61	0.96
51622--51675	19	2.8	19	94	2	90	38	0	0	61	0.96
62221--62384	54	3.0	55	77	8	167	41	12	18	27	1.87
62751--62801	22	2.4	22	93	3	86	37	11	13	37	1.82
63162--63492	113	2.9	113	89	1	506	37	15	20	26	1.93
63553--63616	19	3.3	19	65	26	53	46	7	26	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63552--63619	22	3.3	22	66	26	67	48	7	26	17	1.73
63540--63639	39	2.6	39	98	0	191	46	9	24	21	1.79
63581--63643	20	3.2	20	62	20	51	41	9	23	25	1.85
63574--63923	138	2.5	140	84	6	446	39	14	19	26	1.90
64139--64175	3	12.0	3	94	5	65	35	0	0	64	0.94
70252--70310	24	2.4	25	78	13	70	61	1	0	37	1.07
71347--71426	32	2.6	30	78	7	97	42	3	6	47	1.46
72944--72991	20	2.4	21	93	6	82	22	0	12	64	1.27
72954--72998	21	2.2	20	88	4	63	28	2	8	60	1.39
73383--73467	34	2.5	34	96	0	152	15	24	24	35	1.94
73489--73542	22	2.5	22	96	0	99	35	18	33	12	1.89
73572--73615	23	1.9	23	100	0	88	9	25	40	25	1.84
73569--73622	23	2.4	22	84	9	81	11	24	42	22	1.85
74073--74431	172	2.1	173	90	1	569	39	4	18	37	1.72
76172--76208	6	6.2	6	93	0	56	16	0	62	21	1.33
76167--76208	18	2.3	18	83	0	57	19	2	59	19	1.49
76682--76837	24	6.0	27	68	25	88	50	5	2	41	1.40
76705--77673	8	126.2	8	68	22	217	50	5	3	40	1.43
76739--77550	37	21.7	37	81	13	664	50	5	3	40	1.44
76662--77622	311	3.1	311	91	4	1463	49	5	3	40	1.44
77064--77622	37	15.1	36	88	8	428	49	5	3	40	1.44
76676--77674	14	75.8	13	69	19	244	50	5	3	40	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81081--81129	18	2.7	18	100	0	98	26	34	14	24	1.94
82467--82515	5	9.8	5	97	0	89	2	36	0	61	1.08
83883--83928	23	1.9	24	86	8	67	21	19	23	34	1.96
85400--85483	42	2.0	43	88	2	125	39	13	9	38	1.77
86071--86133	28	2.2	28	83	5	74	33	4	7	53	1.51
87447--87508	30	2.1	30	93	0	106	38	20	8	32	1.82
91197--91226	15	2.0	15	93	0	51	46	13	10	30	1.75
92345--92403	29	2.0	29	100	0	118	49	13	13	23	1.78
97006--97064	29	2.0	29	96	0	109	49	15	11	23	1.77
98006--98045	19	2.1	19	95	0	71	17	10	7	65	1.46
99192--99217	3	8.7	3	100	0	52	69	30	0	0	0.89
103152--103198	12	3.7	12	81	15	58	46	17	19	17	1.84
105491--105530	21	1.9	21	94	0	71	30	15	7	47	1.72
105525--105623	33	3.0	33	94	1	164	32	7	15	45	1.73
105609--105663	13	4.2	13	75	13	58	34	3	12	49	1.59
106079--106112	17	2.0	17	100	0	68	41	11	11	35	1.78
106206--106237	16	2.0	17	88	11	50	43	21	21	12	1.86
108157--108192	17	2.1	17	89	0	54	27	22	8	41	1.82
110161--110299	67	2.1	67	89	2	208	48	7	14	29	1.70
116598--116859	43	6.1	43	75	6	183	38	19	17	25	1.93
121504--121769	41	6.5	41	77	5	243	35	16	18	30	1.93
121493--121812	162	2.0	164	82	3	396	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127071--127160	28	3.2	27	86	9	110	34	13	14	37	1.85
127386--127413	14	2.0	14	100	0	56	28	7	35	28	1.84
137229--137290	24	2.6	24	89	0	88	24	3	16	56	1.55
137656--137682	2	13.5	2	100	0	54	51	0	0	48	1.00
138391--138529	43	3.2	43	75	11	133	24	23	20	31	1.98
138867--138975	21	5.2	21	79	2	85	1	39	17	41	1.60
140883--140937	23	2.4	23	87	0	74	65	0	1	32	1.03
143102--143444	41	8.4	41	81	3	298	31	19	21	27	1.97
143249--143465	81	2.7	80	77	8	190	30	20	18	30	1.96
143088--143485	41	9.7	41	80	3	262	31	19	21	27	1.97
143676--143715	21	1.9	21	89	0	62	45	10	12	32	1.75
146365--146429	27	2.3	27	94	5	112	23	6	27	43	1.77
149789--149819	2	15.5	2	100	0	62	48	0	0	51	1.00
152560--152619	22	2.7	22	82	7	68	40	0	0	60	0.97

Tables:   1

The End!