genome.fa.s2666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002666.1 Hibiscus syriacus cultivar Beakdansim tig00005478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196020

Tables:   1   

This is table  1  of  1  ( 119 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660--726	3	22.3	3	74	17	59	38	0	0	61	0.96
665--726	23	2.7	23	87	7	92	38	0	0	61	0.96
676--724	17	3.1	17	78	21	61	40	0	0	59	0.98
1205--1231	12	2.2	12	100	0	54	70	29	0	0	0.88
2321--2360	21	1.9	21	85	10	55	40	10	0	50	1.36
2552--2591	11	3.3	13	80	13	50	50	2	0	47	1.14
3089--3143	24	2.5	22	80	11	58	27	3	1	67	1.17
8442--8483	10	4.2	10	79	11	50	76	0	21	2	0.90
8445--8520	16	4.6	16	75	18	66	75	0	22	2	0.93
8456--8520	17	3.9	16	79	15	69	75	0	21	3	0.94
8456--8522	34	2.0	33	85	2	89	73	0	22	4	1.01
10680--10899	114	1.9	114	91	0	359	33	15	20	30	1.94
12938--13026	46	1.9	46	88	0	133	35	13	23	26	1.92
12980--13087	54	2.0	54	83	0	135	35	13	22	28	1.92
13459--13559	22	4.6	22	93	0	166	32	15	13	37	1.87
14234--14403	76	2.2	76	90	0	268	24	19	21	34	1.97
14421--14734	112	2.8	112	95	0	549	37	14	19	28	1.91
14649--14826	91	2.0	90	94	1	311	38	14	19	28	1.90
14734--15494	112	6.8	113	91	2	1128	37	14	19	28	1.91
14734--15494	336	2.3	336	93	1	1267	37	14	19	28	1.91
15822--15890	3	23.7	3	82	11	90	36	0	0	63	0.94
16606--16685	33	2.4	33	95	0	142	10	30	45	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21481--21523	17	2.4	18	84	3	61	41	2	0	55	1.12
32335--32381	23	2.0	23	100	0	94	21	12	25	40	1.89
34826--34884	31	1.9	31	89	0	91	42	5	10	42	1.60
34905--34964	22	2.7	22	97	0	111	51	8	0	40	1.32
34538--34946	224	1.8	224	92	0	701	46	9	5	37	1.61
34819--35118	147	2.0	147	97	0	564	48	8	5	38	1.56
34973--35031	31	1.9	31	89	0	91	40	5	11	42	1.64
35055--35111	22	2.6	22	97	0	105	50	8	0	40	1.33
35098--35137	12	3.6	12	77	16	50	52	0	2	45	1.14
38111--38302	29	6.6	29	95	0	330	22	29	33	14	1.93
49357--49383	2	13.5	2	100	0	54	48	0	0	51	1.00
52570--52977	204	2.0	204	98	0	780	38	18	12	29	1.88
54214--54238	12	2.1	12	100	0	50	16	0	0	84	0.63
54231--54286	27	2.2	26	81	12	71	41	1	0	57	1.09
54347--54389	22	2.0	21	81	4	50	58	6	2	32	1.38
55276--55346	30	2.4	30	90	9	110	29	30	22	16	1.96
55340--55388	19	2.6	19	93	0	89	24	26	28	20	1.99
57737--57948	5	40.8	5	66	20	55	73	3	7	15	1.20
57761--57895	23	5.7	23	71	14	87	74	2	7	14	1.15
57756--57946	18	10.8	17	66	24	67	74	3	7	14	1.18
57737--57895	9	17.1	9	68	19	62	74	3	6	15	1.16
58022--58081	19	3.4	19	76	19	58	75	1	8	15	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63299--63361	29	2.3	27	79	15	67	39	7	3	49	1.48
71690--71736	23	2.0	23	100	0	94	21	12	25	40	1.89
73624--73715	45	2.0	45	93	0	157	27	25	18	29	1.98
74779--74860	29	2.8	29	90	1	128	34	13	12	40	1.82
79534--79616	29	2.8	29	83	7	105	32	14	10	42	1.80
82179--82270	18	5.2	17	76	5	76	39	7	9	43	1.66
83044--83196	65	2.4	64	81	5	166	32	16	20	29	1.95
85415--85456	19	2.0	21	86	13	61	71	11	0	16	1.14
85884--85989	44	2.4	44	88	1	151	31	17	17	33	1.94
92057--92138	41	2.0	41	95	0	146	20	15	20	42	1.89
92972--93014	22	2.0	22	81	9	52	62	0	11	25	1.29
95732--95777	18	2.6	18	96	0	83	17	36	0	45	1.49
96723--96792	2	35.0	2	100	0	140	50	0	0	50	1.00
98682--98745	21	3.0	21	68	16	51	45	0	3	51	1.17
102920--102995	35	2.2	35	90	4	118	39	22	1	36	1.63
104663--104708	18	2.6	18	89	0	74	17	34	0	47	1.48
111368--111556	98	1.9	98	85	0	261	26	16	24	31	1.97
114830--114893	3	21.0	3	81	9	76	59	0	0	40	0.97
114826--114896	25	2.7	28	79	16	89	57	0	0	42	0.98
115235--117029	113	15.9	113	95	0	3199	28	20	14	35	1.93
115235--117029	790	2.3	790	97	0	3330	28	20	14	35	1.93
117438--117492	22	2.5	22	87	0	83	41	10	10	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119918--120143	114	2.0	114	91	0	371	30	21	15	32	1.95
122397--122432	11	3.2	11	88	4	54	0	13	0	86	0.58
122397--122436	12	3.2	12	85	3	53	0	15	0	85	0.61
125586--125638	14	3.7	14	84	2	61	52	7	15	24	1.68
129447--129491	14	3.0	15	93	6	74	53	0	0	46	1.00
131898--132020	32	3.8	31	73	10	104	44	2	4	47	1.37
134872--134910	21	1.9	20	89	5	60	46	5	0	48	1.24
136021--136054	4	8.0	4	87	12	50	26	2	0	70	1.01
136021--136060	12	3.0	13	85	14	55	27	5	0	67	1.11
139765--139806	21	2.0	21	100	0	84	47	14	23	14	1.80
139836--139891	29	1.9	29	92	0	94	14	37	28	19	1.91
139895--139981	33	2.6	33	83	7	113	10	39	24	26	1.87
139966--140032	20	3.3	20	91	4	109	10	26	37	25	1.88
139966--140047	10	8.2	10	80	15	98	10	29	34	25	1.90
140092--140149	29	2.0	29	86	0	80	24	27	34	13	1.93
150539--150620	40	2.0	40	83	6	103	30	6	8	54	1.55
155520--155544	13	1.9	13	100	0	50	80	8	8	4	1.03
161851--161898	21	2.3	20	79	10	60	22	27	16	33	1.96
161832--161948	62	1.9	61	81	10	139	26	25	16	31	1.96
162637--162690	24	2.2	24	93	0	90	20	18	20	40	1.91
165236--165289	14	3.6	14	75	18	54	44	20	22	12	1.85
165219--165342	32	3.8	32	93	2	203	44	19	23	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165219--165342	65	1.9	64	91	1	203	44	19	23	12	1.85
165342--165418	19	4.3	18	76	20	74	12	15	23	48	1.80
165357--165450	33	2.8	32	88	6	134	11	19	21	47	1.80
165342--165450	19	6.3	17	72	20	68	12	18	22	46	1.82
165558--165596	14	2.8	13	88	11	60	46	17	0	35	1.49
166945--167011	21	3.2	21	68	4	55	19	20	35	23	1.95
167488--167580	33	2.8	33	93	0	159	44	20	24	10	1.83
167464--167580	19	6.6	19	68	20	74	45	19	23	11	1.83
167596--167660	33	1.9	34	87	3	96	7	15	26	50	1.70
167591--167686	20	5.2	19	78	15	94	8	18	21	51	1.73
167777--168142	94	3.9	94	95	0	653	47	18	13	20	1.82
169861--169987	20	7.1	19	69	20	94	44	18	23	12	1.84
169861--169982	33	3.5	33	84	7	145	45	18	22	12	1.83
169994--170071	20	3.8	20	80	9	95	11	17	19	51	1.76
170600--170678	21	3.8	21	79	0	86	36	15	24	24	1.93
172487--172606	57	2.1	57	95	0	213	29	9	12	49	1.71
172672--172723	26	2.0	26	96	0	95	36	11	25	26	1.90
173067--173092	6	4.3	6	100	0	52	15	0	0	84	0.62
179213--179261	25	2.1	23	85	11	64	42	14	0	42	1.45
179487--179538	22	2.3	22	80	6	59	38	1	1	57	1.21
179574--179679	51	2.1	51	100	0	212	46	3	7	42	1.50
181619--181736	58	2.0	59	81	4	141	34	17	4	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184832--184907	25	2.8	28	90	7	113	17	11	7	63	1.51
186526--186590	23	2.9	22	78	13	87	18	26	26	29	1.98
186526--186613	44	2.0	45	88	2	133	19	23	27	29	1.98
187568--187677	52	2.1	53	94	1	195	28	2	28	40	1.70
189841--190066	80	2.8	78	77	9	197	33	16	18	31	1.93
189764--190196	81	5.4	81	77	7	314	33	15	18	32	1.92
190007--190148	41	3.5	39	70	9	106	32	11	21	34	1.89
189790--190196	160	2.6	156	76	6	388	33	15	18	32	1.93
194096--194176	22	3.8	21	86	4	99	22	6	23	48	1.73

Tables:   1

The End!