genome.fa.s2667.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002667.1 Hibiscus syriacus cultivar Beakdansim tig00005479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93504

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6382--6683	151	2.0	151	98	0	586	29	13	23	34	1.92
9023--9112	29	3.1	29	90	1	128	16	6	24	52	1.68
9138--9200	27	2.3	26	73	7	63	49	26	12	11	1.74
11935--12245	152	2.0	152	98	0	604	30	15	18	35	1.92
14938--15008	2	35.5	2	100	0	142	50	0	0	49	1.00
18586--18648	23	2.7	24	79	18	71	61	0	3	34	1.12
20502--20526	3	8.3	3	100	0	50	32	0	36	32	1.58
21451--21506	25	2.2	25	93	0	94	37	3	23	35	1.72
21461--21513	25	2.1	25	85	3	70	41	5	18	33	1.74
24605--24668	26	2.5	27	82	10	80	20	4	3	71	1.17
28492--29274	106	7.4	106	97	0	1440	33	26	18	22	1.97
29213--29317	43	2.4	43	91	0	165	37	22	19	20	1.95
29107--29390	149	1.9	149	88	0	433	32	25	20	22	1.98
31082--31128	17	2.7	17	83	9	51	25	2	4	68	1.19
31134--31199	25	2.7	25	83	4	73	18	4	3	74	1.12
31141--31228	25	3.4	25	77	14	74	21	3	3	71	1.16
31868--31913	20	2.4	20	78	7	60	45	2	0	52	1.13
34969--35427	221	2.1	220	88	6	674	23	12	27	36	1.91
35378--35449	38	1.9	38	91	2	119	12	6	38	41	1.70
35189--35763	254	2.2	254	89	6	867	24	12	27	35	1.91
35625--35709	38	2.3	38	88	8	129	11	11	38	37	1.79
38386--38420	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38418--38460	18	2.5	17	85	7	61	67	2	4	25	1.22
38873--38942	34	2.1	34	97	0	131	32	12	11	42	1.79
39491--40112	105	6.0	105	91	3	916	22	17	26	33	1.96
40742--41147	65	5.9	67	73	13	226	38	11	20	29	1.88
40887--41167	36	8.0	35	77	12	272	40	14	19	25	1.90
40835--41148	138	2.3	137	85	1	432	39	13	20	26	1.89
40887--41217	36	9.4	35	74	15	206	39	14	19	25	1.90
42098--42146	22	2.2	22	92	0	80	28	14	24	32	1.94
42110--42153	22	2.0	22	86	0	61	31	13	22	31	1.93
42815--42884	16	4.8	14	73	16	54	0	12	10	77	1.00
45944--45971	2	14.0	2	100	0	56	50	0	0	50	1.00
46099--46132	17	2.1	17	88	5	52	44	0	11	44	1.40
46462--46504	18	2.5	17	85	7	61	67	2	4	25	1.22
46917--46986	34	2.1	34	97	0	131	32	12	11	42	1.79
47224--47261	13	2.9	14	88	7	53	76	2	5	15	1.08
47226--47293	19	3.4	19	76	9	64	75	4	4	16	1.13
47226--47268	13	3.3	13	87	6	52	79	2	2	16	0.95
47237--47291	22	2.7	20	83	8	67	74	3	5	16	1.15
57160--57217	2	29.0	2	100	0	116	50	0	0	50	1.00
57459--57483	11	2.3	11	100	0	50	32	0	0	68	0.90
58859--58889	16	1.9	16	93	0	53	29	29	6	35	1.82
58876--58912	18	2.1	18	94	0	65	29	24	5	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60774--60821	18	2.7	18	96	0	87	47	22	25	4	1.69
78668--78717	23	2.2	23	85	0	64	14	12	24	50	1.76
84295--84326	17	1.9	17	93	6	57	59	6	9	25	1.52
86315--86379	32	2.0	33	93	3	114	33	7	15	43	1.75
86639--86716	20	3.8	20	81	3	84	23	20	24	32	1.98
86639--86716	41	1.9	41	86	5	113	23	20	24	32	1.98
88156--88215	31	1.9	31	93	0	102	28	15	25	31	1.95
89511--89570	28	2.1	28	96	0	111	26	23	6	43	1.78
89805--89841	17	2.2	17	95	0	65	16	24	18	40	1.90
91131--91189	30	1.9	31	83	10	77	50	1	5	42	1.34
91236--91268	15	2.2	15	94	0	57	45	0	0	54	0.99

Tables:   1

The End!