genome.fa.s2668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002668.1 Hibiscus syriacus cultivar Beakdansim tig00005480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60612

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739--838	23	4.3	23	93	1	164	36	25	24	15	1.94
1659--1726	30	2.3	29	97	2	127	51	0	0	48	1.00
1923--2375	142	3.2	140	88	9	664	33	0	0	66	0.94
1923--2368	6	77.5	6	86	12	613	33	0	0	66	0.94
2713--2793	35	2.3	36	93	2	137	54	13	16	16	1.72
4122--4191	28	2.5	28	83	4	88	40	8	12	38	1.74
7172--7203	14	2.4	13	94	5	55	50	0	0	50	1.00
27694--27765	33	2.1	34	87	2	101	22	29	13	34	1.93
28133--28197	33	1.9	35	90	6	107	27	21	24	26	1.99
28221--28311	22	4.1	22	81	2	110	26	18	23	31	1.97
28221--28311	45	2.0	44	89	2	137	26	18	23	31	1.97
30244--30275	9	3.7	9	95	4	57	0	12	6	81	0.87
30244--30285	18	2.4	17	84	7	57	2	14	4	78	1.01
31264--31330	33	2.0	33	85	0	89	26	28	13	31	1.94
31785--31827	22	2.0	22	85	0	59	30	20	20	27	1.98
31828--31889	23	2.8	22	75	2	61	25	16	19	38	1.92
32502--32534	13	2.5	13	90	0	57	30	15	21	33	1.94
40945--40976	16	2.0	16	93	0	55	65	0	0	34	0.93
40934--40982	23	2.0	24	84	7	64	63	0	0	36	0.95
43726--43755	2	15.0	2	100	0	60	50	0	0	50	1.00
47081--47143	27	2.4	27	94	2	110	41	28	6	23	1.79
49757--49796	21	1.9	21	89	0	62	32	12	10	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49993--50362	41	9.2	40	75	12	179	27	21	20	30	1.98
49990--50171	81	2.2	81	78	10	192	31	18	19	29	1.96
50119--50350	81	2.9	81	80	3	249	25	24	19	31	1.98
52505--52558	23	2.4	23	87	3	74	33	1	0	64	1.04
54445--54539	21	4.7	20	74	12	54	38	18	40	2	1.63
54490--54539	21	2.4	21	93	0	82	40	20	40	0	1.52
54872--55009	42	3.2	42	77	10	120	30	21	23	25	1.99
56070--56130	23	2.6	24	86	5	79	55	16	3	24	1.56

Tables:   1

The End!